RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 PRR9Q5T870 116 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 PROK1P58294 105 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 Q6ZRP5 223 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 LINC00694P0DN24 101 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 C1orf137Q5JT78 98 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 Q9HAA7 133 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 NCR3O14931 201 aa3.45□□□□□ -1.86
PCDH9-201ENST00000377861 BPTFQ12830 3046 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 ACYP2P14621 99 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 HTN3P15516 51 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 MTORP42345 2549 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 DNAH10OSP0CZ25 163 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 EPG5Q9HCE0 2579 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 DEFB131BA0A096LNP1 70 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 IGF2RP11717 2491 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 DNAH12Q6ZR08 3092 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 IGLV10-54A0A075B6I4 117 aa3.44□□□□□ -1.86
PCDH9-201ENST00000377861 ZNF462Q96JM2 2506 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 REG3GQ6UW15 175 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 PLA2G2AP14555 144 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 CSNK1G2-AS1Q8NCQ2 148 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 Q6ZRX8 168 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 KIAA1549LQ6ZVL6 1849 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 IGKV3D-7A0A0C4DH55 119 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 TSPEAR-AS2P59090 65 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 UBE2DNLQ8IWF7 75 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 EDN2P20800 178 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 COX6A2Q02221 97 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 CHKB-CPT1BH3BT56 60 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 AVPP01185 164 aa3.43□□□□□ -1.86
PCDH9-201ENST00000377861 CEMP1Q6PRD7 247 aaPredicted RBP3.43□□□□□ -1.86
PCDH9-201ENST00000377861 JMJD1CQ15652 2540 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 PLAC8L1A1L4L8 177 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 NUPR2A6NF83 97 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 C7orf33Q8WU49 177 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 PRB3Q04118 309 aaPredicted RBP3.42□□□□□ -1.86
PCDH9-201ENST00000377861 IGLV4-60A0A075B6I1 120 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 IGLV5-37A0A075B6J1 123 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 Q1T7F1 81 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 TANC2Q9HCD6 1990 aa3.42□□□□□ -1.86
PCDH9-201ENST00000377861 CD164Q04900 197 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 PLXND1Q9Y4D7 1925 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 Q6ZQT7 251 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 GAS8-AS1O95177 125 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 PMAIP1Q13794 54 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 Q8NBF4 154 aa3.41□□□□□ -1.86
PCDH9-201ENST00000377861 GCN1Q92616 2671 aaKnown RBP3.4□□□□□ -1.86
PCDH9-201ENST00000377861 LOC101927531A0A1B0GV80 90 aa3.4□□□□□ -1.86
PCDH9-201ENST00000377861 DYSFO75923 2080 aa3.4□□□□□ -1.86
PCDH9-201ENST00000377861 SSBP3-AS1Q7Z2R9 100 aa3.4□□□□□ -1.86
PCDH9-201ENST00000377861 NUP210LQ5VU65 1888 aa3.4□□□□□ -1.86
PCDH9-201ENST00000377861 LRP4O75096 1905 aa3.4□□□□□ -1.86
PCDH9-201ENST00000377861 ADAMTS20P59510 1910 aa3.4□□□□□ -1.87
PCDH9-201ENST00000377861 ZNF843Q8N446 348 aa3.4□□□□□ -1.87
PCDH9-201ENST00000377861 FLNBO75369 2602 aaKnown RBP3.4□□□□□ -1.87
PCDH9-201ENST00000377861 C8orf87E5RJ46 101 aa3.4□□□□□ -1.87
PCDH9-201ENST00000377861 PLA2G5P39877 138 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 ZFYVE26Q68DK2 2539 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 C16orf90A8MZG2 172 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 NCKAP5O14513 1909 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 RNASE13Q5GAN3 156 aaKnown RBP3.39□□□□□ -1.87
PCDH9-201ENST00000377861 C19orf84I3L1E1 186 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 UNQ6190/PRO20217Q6UXQ8 127 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 SPAG11AQ6PDA7 123 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 LINC00528Q8N1L1 170 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 MAP1AP78559 2803 aaPredicted RBP3.39□□□□□ -1.87
PCDH9-201ENST00000377861 SORL1Q92673 2214 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 H7BZZ5 65 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 MED12LQ86YW9 2145 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 SPRR4Q96PI1 79 aa3.39□□□□□ -1.87
PCDH9-201ENST00000377861 KIAA0087Q14695 138 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 CASC2Q6XLA1 102 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 LINC00208Q96KT6 92 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 BBC3Q96PG8 261 aaPredicted RBP3.38□□□□□ -1.87
PCDH9-201ENST00000377861 IGKV2-28A0A075B6P5 120 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 IGKV2D-28P01615 120 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 OBSL1O75147 1896 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 DEFB135Q30KP9 77 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 MOBPQ13875 183 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 TNRC18O15417 2968 aaPredicted RBP3.38□□□□□ -1.87
PCDH9-201ENST00000377861 A0A0C4DFX4 3053 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 CNBPP62633 177 aaKnown RBP3.38□□□□□ -1.87
PCDH9-201ENST00000377861 A0A087WYN8 130 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 WFDC10AQ9H1F0 79 aa3.38□□□□□ -1.87
PCDH9-201ENST00000377861 Q6ZSN1 163 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 A8MWP4 228 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 DEFB105AQ8NG35 78 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 ITPR1Q14643 2758 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 IGLV8-61A0A075B6I0 122 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 A8MUN3 132 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 IGLV1-50A0A075B6I6 118 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 FAM229AH3BQW9 127 aa3.37□□□□□ -1.87
PCDH9-201ENST00000377861 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.36□□□□□ -1.87
PCDH9-201ENST00000377861 C1orf64Q8NEQ6 169 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 DEFB136Q30KP8 78 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 LINC00336Q6ZUF6 198 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 TNP2Q05952 138 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 PCNX3Q9H6A9 2034 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 ATRQ13535 2644 aa3.36□□□□□ -1.87
PCDH9-201ENST00000377861 FN1P02751 2386 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms