RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 UBE2BP63146 152 aa12.8□□□□□ -0.36
VSX1-201ENST00000376707 PRSS2P07478 247 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 C10orf91Q5T1B1 145 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 ERASQ7Z444 233 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 COMMD7Q86VX2 200 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 KRTAP7-1Q8IUC3 87 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 ALKBH7Q9BT30 221 aaPredicted RBP12.79□□□□□ -0.36
VSX1-201ENST00000376707 H0Y9J4 135 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 COX19Q49B96 90 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 Q8IZM0 81 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 TOMM7Q9P0U1 55 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 CDKN2A-AS1Q9UH64 79 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 LINC01549A6NIU2 74 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 CKS1BP61024 79 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 C6orf226Q5I0X4 101 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 PRR26Q8N8Z3 221 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 SCGB3A1Q96QR1 104 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 GEMIN7Q9H840 131 aaKnown RBP12.76□□□□□ -0.37
VSX1-201ENST00000376707 CARHSP1Q9Y2V2 147 aaKnown RBP12.76□□□□□ -0.37
VSX1-201ENST00000376707 RNF213Q63HN8 5207 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 C9orf129Q5T035 196 aaKnown RBP12.75□□□□□ -0.37
VSX1-201ENST00000376707 RHEBQ15382 184 aa12.74□□□□□ -0.37
VSX1-201ENST00000376707 MRPL18Q9H0U6 180 aaKnown RBP12.72□□□□□ -0.37
VSX1-201ENST00000376707 IGLV5-45A0A087WSX0 123 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 TINCRA0A1B0GVN0 87 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 RPS10P5Q9NQ39 176 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 F8VRH5 84 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 FABP9Q0Z7S8 132 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 LINC00469Q8N7U9 141 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 CST9LQ9H4G1 147 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 IGLV1-50A0A075B6I6 118 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 SMIM1B2RUZ4 78 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 CXCL5P42830 114 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 FA2HQ7L5A8 372 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 PDZD11Q5EBL8 140 aa12.68□□□□□ -0.38
VSX1-201ENST00000376707 KRTAP1-4P0C5Y4 121 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 PMVKQ15126 192 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 XAGE1AQ9HD64 81 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 SMCO4Q9NRQ5 59 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 C22orf24Q9Y442 160 aa12.66□□□□□ -0.38
VSX1-201ENST00000376707 LBHQ53QV2 105 aaPredicted RBP12.65□□□□□ -0.38
VSX1-201ENST00000376707 COX7B2Q8TF08 81 aa12.64□□□□□ -0.39
VSX1-201ENST00000376707 A0A096LNJ9 63 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 NUPR1O60356 82 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 ZNF861PO60384 105 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 RPL13AP40429 203 aaKnown RBP12.62□□□□□ -0.39
VSX1-201ENST00000376707 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 URB1-AS1Q96HZ7 61 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 TP73-AS1Q9UF72 201 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 TRAPPC1Q9Y5R8 145 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 SPINK8P0C7L1 97 aa12.6□□□□□ -0.39
VSX1-201ENST00000376707 H3BRM9 83 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 LINC00614P0C842 121 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 IGLC3P0DOY3 106 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 MRPL55Q7Z7F7 128 aaKnown RBP12.59□□□□□ -0.39
VSX1-201ENST00000376707 APOC3P02656 99 aa12.58□□□□□ -0.4
VSX1-201ENST00000376707 SNAPINO95295 136 aa12.57□□□□□ -0.4
VSX1-201ENST00000376707 SVBPQ8N300 66 aa12.57□□□□□ -0.4
VSX1-201ENST00000376707 IGLV5-39A0A0G2JS06 123 aa12.56□□□□□ -0.4
VSX1-201ENST00000376707 HBDP02042 147 aa12.56□□□□□ -0.4
VSX1-201ENST00000376707 NDUFA5Q16718 116 aa12.55□□□□□ -0.4
VSX1-201ENST00000376707 LPAP08519 4548 aa12.55□□□□□ -0.4
VSX1-201ENST00000376707 RPL28P46779 137 aaKnown RBP12.54□□□□□ -0.4
VSX1-201ENST00000376707 BCE1O60756 84 aa12.53□□□□□ -0.4
VSX1-201ENST00000376707 RAB5BP61020 215 aa12.53□□□□□ -0.4
VSX1-201ENST00000376707 ATP5LO75964 103 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 ZNF22P17026 224 aaPredicted RBP12.52□□□□□ -0.41
VSX1-201ENST00000376707 NDUFA6P56556 154 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 PMCHL1Q16048 86 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 PRR4Q16378 134 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 LINC00167Q96N53 147 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 IGLV5-37A0A075B6J1 123 aa12.51□□□□□ -0.41
VSX1-201ENST00000376707 RPL37AP8A6NKH3 93 aa12.51□□□□□ -0.41
VSX1-201ENST00000376707 GAGE10A6NGK3 116 aa12.5□□□□□ -0.41
VSX1-201ENST00000376707 YPEL4Q96NS1 127 aa12.5□□□□□ -0.41
VSX1-201ENST00000376707 NKAPP1Q8N9T2 125 aa12.49□□□□□ -0.41
VSX1-201ENST00000376707 C11orf86A6NJI1 115 aa12.47□□□□□ -0.41
VSX1-201ENST00000376707 BAGE3Q86Y29 109 aa12.47□□□□□ -0.41
VSX1-201ENST00000376707 CRYGAP11844 174 aa12.45□□□□□ -0.42
VSX1-201ENST00000376707 COX17Q14061 63 aa12.45□□□□□ -0.42
VSX1-201ENST00000376707 A0A087X002 238 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 TSPAN13O95857 204 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 PFN2P35080 140 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 UBE2AP49459 152 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 SFTA2Q6UW10 78 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 CHCHD1Q96BP2 118 aaKnown RBP12.44□□□□□ -0.42
VSX1-201ENST00000376707 ERG28Q9UKR5 140 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 TMEM170BQ5T4T1 132 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 TYMSOSQ8TAI1 123 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 SND1-IT1Q9HBX3 110 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
VSX1-201ENST00000376707 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
VSX1-201ENST00000376707 ZNF625Q96I27 306 aaPredicted RBP12.41□□□□□ -0.42
VSX1-201ENST00000376707 CHTOPQ9Y3Y2 248 aaKnown RBP12.41□□□□□ -0.42
VSX1-201ENST00000376707 TRAV12-1A0A0B4J245 112 aa12.4□□□□□ -0.42
VSX1-201ENST00000376707 KRTAP13-1Q8IUC0 172 aa12.4□□□□□ -0.42
VSX1-201ENST00000376707 SCO1O75880 301 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 VPREB1P12018 145 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 ANAPC11Q9NYG5 84 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 IFI27L1Q96BM0 104 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms