RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 UBE2BP63146 152 aa12.8□□□□□ -0.36
VSX1-201ENST00000376707 PRSS2P07478 247 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 C10orf91Q5T1B1 145 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 ERASQ7Z444 233 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 COMMD7Q86VX2 200 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 KRTAP7-1Q8IUC3 87 aa12.79□□□□□ -0.36
VSX1-201ENST00000376707 ALKBH7Q9BT30 221 aaPredicted RBP12.79□□□□□ -0.36
VSX1-201ENST00000376707 H0Y9J4 135 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 COX19Q49B96 90 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 Q8IZM0 81 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 TOMM7Q9P0U1 55 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 CDKN2A-AS1Q9UH64 79 aa12.78□□□□□ -0.36
VSX1-201ENST00000376707 LINC01549A6NIU2 74 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 CKS1BP61024 79 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 C6orf226Q5I0X4 101 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 PRR26Q8N8Z3 221 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 SCGB3A1Q96QR1 104 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 GEMIN7Q9H840 131 aaKnown RBP12.76□□□□□ -0.37
VSX1-201ENST00000376707 CARHSP1Q9Y2V2 147 aaKnown RBP12.76□□□□□ -0.37
VSX1-201ENST00000376707 RNF213Q63HN8 5207 aa12.76□□□□□ -0.37
VSX1-201ENST00000376707 C9orf129Q5T035 196 aaKnown RBP12.75□□□□□ -0.37
VSX1-201ENST00000376707 RHEBQ15382 184 aa12.74□□□□□ -0.37
VSX1-201ENST00000376707 MRPL18Q9H0U6 180 aaKnown RBP12.72□□□□□ -0.37
VSX1-201ENST00000376707 IGLV5-45A0A087WSX0 123 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 TINCRA0A1B0GVN0 87 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 RPS10P5Q9NQ39 176 aa12.71□□□□□ -0.37
VSX1-201ENST00000376707 F8VRH5 84 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 FABP9Q0Z7S8 132 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 LINC00469Q8N7U9 141 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 CST9LQ9H4G1 147 aa12.7□□□□□ -0.38
VSX1-201ENST00000376707 IGLV1-50A0A075B6I6 118 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 SMIM1B2RUZ4 78 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 CXCL5P42830 114 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 FA2HQ7L5A8 372 aa12.69□□□□□ -0.38
VSX1-201ENST00000376707 PDZD11Q5EBL8 140 aa12.68□□□□□ -0.38
VSX1-201ENST00000376707 KRTAP1-4P0C5Y4 121 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 PMVKQ15126 192 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 XAGE1AQ9HD64 81 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 SMCO4Q9NRQ5 59 aa12.67□□□□□ -0.38
VSX1-201ENST00000376707 C22orf24Q9Y442 160 aa12.66□□□□□ -0.38
VSX1-201ENST00000376707 LBHQ53QV2 105 aaPredicted RBP12.65□□□□□ -0.38
VSX1-201ENST00000376707 COX7B2Q8TF08 81 aa12.64□□□□□ -0.39
VSX1-201ENST00000376707 A0A096LNJ9 63 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 NUPR1O60356 82 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 ZNF861PO60384 105 aa12.62□□□□□ -0.39
VSX1-201ENST00000376707 RPL13AP40429 203 aaKnown RBP12.62□□□□□ -0.39
VSX1-201ENST00000376707 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 URB1-AS1Q96HZ7 61 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 TP73-AS1Q9UF72 201 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 TRAPPC1Q9Y5R8 145 aa12.61□□□□□ -0.39
VSX1-201ENST00000376707 SPINK8P0C7L1 97 aa12.6□□□□□ -0.39
VSX1-201ENST00000376707 H3BRM9 83 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 LINC00614P0C842 121 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 IGLC3P0DOY3 106 aa12.59□□□□□ -0.39
VSX1-201ENST00000376707 MRPL55Q7Z7F7 128 aaKnown RBP12.59□□□□□ -0.39
VSX1-201ENST00000376707 APOC3P02656 99 aa12.58□□□□□ -0.4
VSX1-201ENST00000376707 SNAPINO95295 136 aa12.57□□□□□ -0.4
VSX1-201ENST00000376707 SVBPQ8N300 66 aa12.57□□□□□ -0.4
VSX1-201ENST00000376707 IGLV5-39A0A0G2JS06 123 aa12.56□□□□□ -0.4
VSX1-201ENST00000376707 HBDP02042 147 aa12.56□□□□□ -0.4
VSX1-201ENST00000376707 NDUFA5Q16718 116 aa12.55□□□□□ -0.4
VSX1-201ENST00000376707 LPAP08519 4548 aa12.55□□□□□ -0.4
VSX1-201ENST00000376707 RPL28P46779 137 aaKnown RBP12.54□□□□□ -0.4
VSX1-201ENST00000376707 BCE1O60756 84 aa12.53□□□□□ -0.4
VSX1-201ENST00000376707 RAB5BP61020 215 aa12.53□□□□□ -0.4
VSX1-201ENST00000376707 ATP5LO75964 103 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 ZNF22P17026 224 aaPredicted RBP12.52□□□□□ -0.41
VSX1-201ENST00000376707 NDUFA6P56556 154 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 PMCHL1Q16048 86 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 PRR4Q16378 134 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 LINC00167Q96N53 147 aa12.52□□□□□ -0.41
VSX1-201ENST00000376707 IGLV5-37A0A075B6J1 123 aa12.51□□□□□ -0.41
VSX1-201ENST00000376707 RPL37AP8A6NKH3 93 aa12.51□□□□□ -0.41
VSX1-201ENST00000376707 GAGE10A6NGK3 116 aa12.5□□□□□ -0.41
VSX1-201ENST00000376707 YPEL4Q96NS1 127 aa12.5□□□□□ -0.41
VSX1-201ENST00000376707 NKAPP1Q8N9T2 125 aa12.49□□□□□ -0.41
VSX1-201ENST00000376707 C11orf86A6NJI1 115 aa12.47□□□□□ -0.41
VSX1-201ENST00000376707 BAGE3Q86Y29 109 aa12.47□□□□□ -0.41
VSX1-201ENST00000376707 CRYGAP11844 174 aa12.45□□□□□ -0.42
VSX1-201ENST00000376707 COX17Q14061 63 aa12.45□□□□□ -0.42
VSX1-201ENST00000376707 A0A087X002 238 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 TSPAN13O95857 204 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 PFN2P35080 140 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 UBE2AP49459 152 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 SFTA2Q6UW10 78 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 CHCHD1Q96BP2 118 aaKnown RBP12.44□□□□□ -0.42
VSX1-201ENST00000376707 ERG28Q9UKR5 140 aa12.44□□□□□ -0.42
VSX1-201ENST00000376707 TMEM170BQ5T4T1 132 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 TYMSOSQ8TAI1 123 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 SND1-IT1Q9HBX3 110 aa12.43□□□□□ -0.42
VSX1-201ENST00000376707 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
VSX1-201ENST00000376707 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
VSX1-201ENST00000376707 ZNF625Q96I27 306 aaPredicted RBP12.41□□□□□ -0.42
VSX1-201ENST00000376707 CHTOPQ9Y3Y2 248 aaKnown RBP12.41□□□□□ -0.42
VSX1-201ENST00000376707 TRAV12-1A0A0B4J245 112 aa12.4□□□□□ -0.42
VSX1-201ENST00000376707 KRTAP13-1Q8IUC0 172 aa12.4□□□□□ -0.42
VSX1-201ENST00000376707 SCO1O75880 301 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 VPREB1P12018 145 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 ANAPC11Q9NYG5 84 aa12.39□□□□□ -0.43
VSX1-201ENST00000376707 IFI27L1Q96BM0 104 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms