RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 C9orf116Q5BN46 136 aaPredicted RBP17.24■□□□□ 0.35
ATPAF1-201ENST00000329231 PKHD1L1Q86WI1 4243 aa17.23■□□□□ 0.35
ATPAF1-201ENST00000329231 TRBV30A0A0K0K1B3 111 aa17.23■□□□□ 0.35
ATPAF1-201ENST00000329231 PRSS2P07478 247 aa17.23■□□□□ 0.35
ATPAF1-201ENST00000329231 CDKN2A-AS1Q9UH64 79 aa17.23■□□□□ 0.35
ATPAF1-201ENST00000329231 TINCRA0A1B0GVN0 87 aa17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 SCO1O75880 301 aa17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 C2orf82Q6UX34 121 aa17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 BAGE3Q86Y29 109 aa17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 PACRGQ96M98 296 aaPredicted RBP17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 LRP1Q07954 4544 aaKnown RBP17.22■□□□□ 0.35
ATPAF1-201ENST00000329231 ATP5LO75964 103 aa17.21■□□□□ 0.35
ATPAF1-201ENST00000329231 Q6ZRP5 223 aa17.21■□□□□ 0.35
ATPAF1-201ENST00000329231 TOMM7Q9P0U1 55 aa17.21■□□□□ 0.35
ATPAF1-201ENST00000329231 CKS1BP61024 79 aa17.19■□□□□ 0.34
ATPAF1-201ENST00000329231 C6orf226Q5I0X4 101 aa17.19■□□□□ 0.34
ATPAF1-201ENST00000329231 Q8IZM0 81 aa17.19■□□□□ 0.34
ATPAF1-201ENST00000329231 LINC00469Q8N7U9 141 aa17.19■□□□□ 0.34
ATPAF1-201ENST00000329231 IGLV5-45A0A087WSX0 123 aa17.18■□□□□ 0.34
ATPAF1-201ENST00000329231 NDUFA6P56556 154 aa17.18■□□□□ 0.34
ATPAF1-201ENST00000329231 GAGE2EQ4V326 116 aa17.17■□□□□ 0.34
ATPAF1-201ENST00000329231 GAGE2DQ9UEU5 116 aa17.17■□□□□ 0.34
ATPAF1-201ENST00000329231 HSBP1O75506 76 aa17.16■□□□□ 0.34
ATPAF1-201ENST00000329231 FAT3Q8TDW7 4589 aa17.16■□□□□ 0.34
ATPAF1-201ENST00000329231 NDUFC2-KCTD14E9PQ53 114 aa17.15■□□□□ 0.34
ATPAF1-201ENST00000329231 IGLC3P0DOY3 106 aa17.13■□□□□ 0.33
ATPAF1-201ENST00000329231 PHF5AQ7RTV0 110 aaKnown RBP17.12■□□□□ 0.33
ATPAF1-201ENST00000329231 SMIM1B2RUZ4 78 aa17.11■□□□□ 0.33
ATPAF1-201ENST00000329231 SERF1AO75920 110 aa17.11■□□□□ 0.33
ATPAF1-201ENST00000329231 FAM19A2Q8N3H0 131 aa17.11■□□□□ 0.33
ATPAF1-201ENST00000329231 FAM168BA1KXE4 195 aa17.1■□□□□ 0.33
ATPAF1-201ENST00000329231 CXCL5P42830 114 aa17.1■□□□□ 0.33
ATPAF1-201ENST00000329231 SPINK6Q6UWN8 80 aa17.1■□□□□ 0.33
ATPAF1-201ENST00000329231 F8VRH5 84 aa17.09■□□□□ 0.33
ATPAF1-201ENST00000329231 H3BRM9 83 aa17.09■□□□□ 0.33
ATPAF1-201ENST00000329231 LINC00310P59036 64 aa17.09■□□□□ 0.33
ATPAF1-201ENST00000329231 IFI27L1Q96BM0 104 aa17.09■□□□□ 0.33
ATPAF1-201ENST00000329231 FAM19A5Q7Z5A7 132 aaPredicted RBP17.08■□□□□ 0.32
ATPAF1-201ENST00000329231 PSORS1C2Q9UIG4 136 aa17.07■□□□□ 0.32
ATPAF1-201ENST00000329231 SPINK8P0C7L1 97 aa17.06■□□□□ 0.32
ATPAF1-201ENST00000329231 TRAV12-1A0A0B4J245 112 aa17.05■□□□□ 0.32
ATPAF1-201ENST00000329231 SRSF9Q13242 221 aaKnown RBP eCLIP17.05■□□□□ 0.32
ATPAF1-201ENST00000329231 COX7B2Q8TF08 81 aa17.05■□□□□ 0.32
ATPAF1-201ENST00000329231 CHTOPQ9Y3Y2 248 aaKnown RBP17.05■□□□□ 0.32
ATPAF1-201ENST00000329231 ZNF22P17026 224 aaPredicted RBP17.04■□□□□ 0.32
ATPAF1-201ENST00000329231 C9orf129Q5T035 196 aaKnown RBP17.04■□□□□ 0.32
ATPAF1-201ENST00000329231 SERTAD4-AS1Q5TG53 156 aa17.04■□□□□ 0.32
ATPAF1-201ENST00000329231 NUPR1O60356 82 aa17.03■□□□□ 0.32
ATPAF1-201ENST00000329231 MT1HL1P0DM35 61 aa17.03■□□□□ 0.32
ATPAF1-201ENST00000329231 C11orf86A6NJI1 115 aa17.02■□□□□ 0.32
ATPAF1-201ENST00000329231 LEPROTL1O95214 131 aa17.02■□□□□ 0.32
ATPAF1-201ENST00000329231 M0QXV9 152 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BKO60814 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BJP06899 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 S100A1P23297 94 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BOP23527 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BBP33778 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BDP58876 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BCP62807 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST2H2BEQ16778 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 C1orf137Q5JT78 98 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 REG3GQ6UW15 175 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 KRTAP7-1Q8IUC3 87 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BHQ93079 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BNQ99877 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 HIST1H2BMQ99879 126 aa17.01■□□□□ 0.31
ATPAF1-201ENST00000329231 LINC01600Q96MT4 127 aa16.99■□□□□ 0.31
ATPAF1-201ENST00000329231 IGLV5-39A0A0G2JS06 123 aa16.98■□□□□ 0.31
ATPAF1-201ENST00000329231 TMEM170BQ5T4T1 132 aa16.98■□□□□ 0.31
ATPAF1-201ENST00000329231 XAGE1AQ9HD64 81 aa16.97■□□□□ 0.31
ATPAF1-201ENST00000329231 HSPB8Q9UJY1 196 aa16.97■□□□□ 0.31
ATPAF1-201ENST00000329231 UBE2BP63146 152 aa16.96■□□□□ 0.31
ATPAF1-201ENST00000329231 ATP6V1G1O75348 118 aa16.94■□□□□ 0.3
ATPAF1-201ENST00000329231 FABP4P15090 132 aa16.93■□□□□ 0.3
ATPAF1-201ENST00000329231 KRTAP11-1Q8IUC1 163 aa16.93■□□□□ 0.3
ATPAF1-201ENST00000329231 H0Y8G0 127 aa16.92■□□□□ 0.3
ATPAF1-201ENST00000329231 IGLV7-43P04211 117 aa16.92■□□□□ 0.3
ATPAF1-201ENST00000329231 ODF1Q14990 250 aa16.91■□□□□ 0.3
ATPAF1-201ENST00000329231 C22orf24Q9Y442 160 aa16.89■□□□□ 0.29
ATPAF1-201ENST00000329231 TMEM223A0PJW6 202 aa16.88■□□□□ 0.29
ATPAF1-201ENST00000329231 LBHQ53QV2 105 aaPredicted RBP16.88■□□□□ 0.29
ATPAF1-201ENST00000329231 DIRC1Q969H9 104 aa16.86■□□□□ 0.29
ATPAF1-201ENST00000329231 MAP1LC3CQ9BXW4 147 aa16.85■□□□□ 0.29
ATPAF1-201ENST00000329231 TP73-AS1Q9UF72 201 aa16.85■□□□□ 0.29
ATPAF1-201ENST00000329231 SFTA2Q6UW10 78 aa16.84■□□□□ 0.29
ATPAF1-201ENST00000329231 PLA2G2DQ9UNK4 145 aa16.84■□□□□ 0.29
ATPAF1-201ENST00000329231 PLNP26678 52 aa16.83■□□□□ 0.28
ATPAF1-201ENST00000329231 COA6Q5JTJ3 125 aaKnown RBP16.83■□□□□ 0.28
ATPAF1-201ENST00000329231 MRPL55Q7Z7F7 128 aaKnown RBP16.82■□□□□ 0.28
ATPAF1-201ENST00000329231 KRTAP10-8P60410 259 aa16.81■□□□□ 0.28
ATPAF1-201ENST00000329231 DPM2O94777 84 aa16.8■□□□□ 0.28
ATPAF1-201ENST00000329231 PFN2P35080 140 aa16.8■□□□□ 0.28
ATPAF1-201ENST00000329231 ZNF625Q96I27 306 aaPredicted RBP16.79■□□□□ 0.28
ATPAF1-201ENST00000329231 TNXBP22105 4242 aa16.78■□□□□ 0.28
ATPAF1-201ENST00000329231 H0Y9J4 135 aa16.78■□□□□ 0.28
ATPAF1-201ENST00000329231 ERG28Q9UKR5 140 aa16.78■□□□□ 0.28
ATPAF1-201ENST00000329231 COX17Q14061 63 aa16.77■□□□□ 0.28
ATPAF1-201ENST00000329231 PMCHL2Q9BQD1 86 aa16.77■□□□□ 0.28
ATPAF1-201ENST00000329231 SYS1-DBNDD2H3BUS1 97 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms