RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 TM2D3Q9BRN9 247 aa15.38■□□□□ 0.05
PDLIM2-202ENST00000308354 HERV-K104P63124 156 aa15.37■□□□□ 0.05
PDLIM2-202ENST00000308354 ETDBQ3ZM63 59 aa15.37■□□□□ 0.05
PDLIM2-202ENST00000308354 TRBV20-1A0A075B6N2 111 aa15.37■□□□□ 0.05
PDLIM2-202ENST00000308354 A0A087WZ39 114 aa15.37■□□□□ 0.05
PDLIM2-202ENST00000308354 DEFB131BA0A096LNP1 70 aa15.37■□□□□ 0.05
PDLIM2-202ENST00000308354 IGLV10-54A0A075B6I4 117 aa15.36■□□□□ 0.05
PDLIM2-202ENST00000308354 SS18Q15532 418 aa15.36■□□□□ 0.05
PDLIM2-202ENST00000308354 SOSTDC1Q6X4U4 206 aa15.35■□□□□ 0.05
PDLIM2-202ENST00000308354 SMCPP49901 116 aaPredicted RBP15.35■□□□□ 0.05
PDLIM2-202ENST00000308354 REG3AQ06141 175 aa15.34■□□□□ 0.05
PDLIM2-202ENST00000308354 H3BNG1 76 aa15.33■□□□□ 0.04
PDLIM2-202ENST00000308354 TRIAP1O43715 76 aa15.33■□□□□ 0.04
PDLIM2-202ENST00000308354 SVIPQ8NHG7 77 aa15.32■□□□□ 0.04
PDLIM2-202ENST00000308354 HUWE1Q7Z6Z7 4374 aaKnown RBP15.31■□□□□ 0.04
PDLIM2-202ENST00000308354 RPL13AP40429 203 aaKnown RBP15.31■□□□□ 0.04
PDLIM2-202ENST00000308354 TRBV30A0A0K0K1B3 111 aa15.31■□□□□ 0.04
PDLIM2-202ENST00000308354 WFDC10BQ8IUB3 73 aa15.3■□□□□ 0.04
PDLIM2-202ENST00000308354 KLK12Q9UKR0 248 aa15.3■□□□□ 0.04
PDLIM2-202ENST00000308354 COPS9Q8WXC6 57 aa15.29■□□□□ 0.04
PDLIM2-202ENST00000308354 CHCHD10Q8WYQ3 142 aaPredicted RBP15.29■□□□□ 0.04
PDLIM2-202ENST00000308354 ESRGQ1W209 222 aa15.28■□□□□ 0.04
PDLIM2-202ENST00000308354 MIR7-3HGQ8N6C7 128 aa15.26■□□□□ 0.03
PDLIM2-202ENST00000308354 COL7A1Q02388 2944 aa15.25■□□□□ 0.03
PDLIM2-202ENST00000308354 CD164L2Q6UWJ8 174 aa15.24■□□□□ 0.03
PDLIM2-202ENST00000308354 ATXN8Q156A1 80 aa15.24■□□□□ 0.03
PDLIM2-202ENST00000308354 C6orf226Q5I0X4 101 aa15.24■□□□□ 0.03
PDLIM2-202ENST00000308354 C9JAW5 83 aa15.23■□□□□ 0.03
PDLIM2-202ENST00000308354 LINC00158P58513 81 aa15.23■□□□□ 0.03
PDLIM2-202ENST00000308354 ENHOQ6UWT2 76 aa15.23■□□□□ 0.03
PDLIM2-202ENST00000308354 TRAV10A0A0B4J240 114 aa15.21■□□□□ 0.03
PDLIM2-202ENST00000308354 COX7A2LO14548 114 aa15.21■□□□□ 0.03
PDLIM2-202ENST00000308354 COX6CP09669 75 aa15.21■□□□□ 0.03
PDLIM2-202ENST00000308354 PFN2P35080 140 aa15.21■□□□□ 0.03
PDLIM2-202ENST00000308354 PRR34Q9NV39 138 aa15.21■□□□□ 0.03
PDLIM2-202ENST00000308354 IBA57-AS1B1ANH7 110 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 SLC25A20O43772 301 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 UBE2WQ96B02 151 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 FOXI1Q12951 378 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 Q8IZM0 81 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 CLEC2BQ92478 149 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 PPDPFQ9H3Y8 114 aa15.2■□□□□ 0.02
PDLIM2-202ENST00000308354 STAB2Q8WWQ8 2551 aa15.19■□□□□ 0.02
PDLIM2-202ENST00000308354 GAGE12HA6NDE8 117 aa15.19■□□□□ 0.02
PDLIM2-202ENST00000308354 LINC01620Q4KN68 170 aa15.19■□□□□ 0.02
PDLIM2-202ENST00000308354 C2orf82Q6UX34 121 aa15.19■□□□□ 0.02
PDLIM2-202ENST00000308354 MALP21145 153 aa15.19■□□□□ 0.02
PDLIM2-202ENST00000308354 J3QR89 54 aa15.18■□□□□ 0.02
PDLIM2-202ENST00000308354 TEN1Q86WV5 123 aa15.18■□□□□ 0.02
PDLIM2-202ENST00000308354 LINC01561Q8N1V8 128 aa15.18■□□□□ 0.02
PDLIM2-202ENST00000308354 CRPP02741 224 aa15.17■□□□□ 0.02
PDLIM2-202ENST00000308354 SND1-IT1Q9HBX3 110 aa15.17■□□□□ 0.02
PDLIM2-202ENST00000308354 ANKRD29Q8N6D5 301 aa15.16■□□□□ 0.02
PDLIM2-202ENST00000308354 CCL18P55774 89 aa15.15■□□□□ 0.02
PDLIM2-202ENST00000308354 IGKV2-28A0A075B6P5 120 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 IGKV2D-28P01615 120 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 KIAA0087Q14695 138 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 LST1O00453 97 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 CKS1BP61024 79 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 CARD19Q96LW7 228 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 DNAH9Q9NYC9 4486 aa15.13■□□□□ 0.01
PDLIM2-202ENST00000308354 LINC00337Q8N6G1 96 aa15.12■□□□□ 0.01
PDLIM2-202ENST00000308354 PPDPFLQ8WWR9 84 aa15.12■□□□□ 0.01
PDLIM2-202ENST00000308354 LINC00526Q96FQ7 95 aa15.12■□□□□ 0.01
PDLIM2-202ENST00000308354 TRBV10-2A0A0K0K1G8 114 aa15.11■□□□□ 0.01
PDLIM2-202ENST00000308354 M0QXV9 152 aa15.11■□□□□ 0.01
PDLIM2-202ENST00000308354 CFAP161Q6P656 301 aa15.11■□□□□ 0.01
PDLIM2-202ENST00000308354 TRAV13-2A0A0B4J235 113 aa15.1■□□□□ 0.01
PDLIM2-202ENST00000308354 C15orf53Q8NAA6 179 aa15.1■□□□□ 0.01
PDLIM2-202ENST00000308354 B9D2Q9BPU9 175 aa15.09■□□□□ 0.01
PDLIM2-202ENST00000308354 C6orf223Q8N319 242 aa15.09■□□□□ 0.01
PDLIM2-202ENST00000308354 LINC00588Q9Y4M8 146 aa15.09■□□□□ 0.01
PDLIM2-202ENST00000308354 LINC01556Q5JQF7 62 aa15.08■□□□□ 0
PDLIM2-202ENST00000308354 DNHD1Q96M86 4753 aa15.07■□□□□ 0
PDLIM2-202ENST00000308354 TRAV8-4A0A0B4J246 113 aa15.07■□□□□ 0
PDLIM2-202ENST00000308354 CXCL5P42830 114 aa15.06■□□□□ 0
PDLIM2-202ENST00000308354 C9orf116Q5BN46 136 aaPredicted RBP15.06■□□□□ 0
PDLIM2-202ENST00000308354 SPAG11BQ08648 103 aa15.05■□□□□ 0
PDLIM2-202ENST00000308354 NTN5Q8WTR8 489 aaPredicted RBP15.05■□□□□ -0
PDLIM2-202ENST00000308354 LINC01600Q96MT4 127 aa15.04■□□□□ -0
PDLIM2-202ENST00000308354 KLK5Q9Y337 293 aaPredicted RBP15.04■□□□□ -0
PDLIM2-202ENST00000308354 C10orf25Q5T742 122 aa15.03■□□□□ -0
PDLIM2-202ENST00000308354 KRTAP26-1Q6PEX3 210 aa15.03■□□□□ -0
PDLIM2-202ENST00000308354 RPL28P46779 137 aaKnown RBP15.02□□□□□ -0.01
PDLIM2-202ENST00000308354 UNQ6190/PRO20217Q6UXQ8 127 aa15.02□□□□□ -0.01
PDLIM2-202ENST00000308354 Q9HAA7 133 aa15.02□□□□□ -0.01
PDLIM2-202ENST00000308354 DNAH10OSP0CZ25 163 aa15.01□□□□□ -0.01
PDLIM2-202ENST00000308354 H3BT86 120 aa15.01□□□□□ -0.01
PDLIM2-202ENST00000308354 TEX49A0A1B0GTD5 131 aa15□□□□□ -0.01
PDLIM2-202ENST00000308354 COX17Q14061 63 aa15□□□□□ -0.01
PDLIM2-202ENST00000308354 SMIM11BQ8TCY0 68 aa15□□□□□ -0.01
PDLIM2-202ENST00000308354 FAM218AQ96MZ4 157 aa15□□□□□ -0.01
PDLIM2-202ENST00000308354 IGKV2D-24A0A075B6R9 120 aa15□□□□□ -0.01
PDLIM2-202ENST00000308354 HIGD2BQ4VC39 106 aa14.99□□□□□ -0.01
PDLIM2-202ENST00000308354 C1orf43Q9BWL3 253 aa14.99□□□□□ -0.01
PDLIM2-202ENST00000308354 SIGMAR1Q99720 223 aa14.98□□□□□ -0.01
PDLIM2-202ENST00000308354 MEGF8Q7Z7M0 2845 aa14.98□□□□□ -0.01
PDLIM2-202ENST00000308354 OR13C6PQ8NH95 151 aa14.98□□□□□ -0.01
PDLIM2-202ENST00000308354 LYSTQ99698 3801 aa14.96□□□□□ -0.01
PDLIM2-202ENST00000308354 PRR3P79522 188 aaKnown RBP14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms