RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ANGP03950 147 aaKnown RBP16.48■□□□□ 0.23
TRIM54-201ENST00000296098 SND1-IT1Q9HBX3 110 aa16.48■□□□□ 0.23
TRIM54-201ENST00000296098 TRAV13-2A0A0B4J235 113 aa16.47■□□□□ 0.23
TRIM54-201ENST00000296098 H3BT86 120 aa16.47■□□□□ 0.23
TRIM54-201ENST00000296098 C2orf82Q6UX34 121 aa16.47■□□□□ 0.23
TRIM54-201ENST00000296098 Q8N3U1 123 aa16.47■□□□□ 0.23
TRIM54-201ENST00000296098 NTN5Q8WTR8 489 aaPredicted RBP16.47■□□□□ 0.23
TRIM54-201ENST00000296098 CRPP02741 224 aa16.46■□□□□ 0.23
TRIM54-201ENST00000296098 OXLD1Q5BKU9 147 aa16.46■□□□□ 0.23
TRIM54-201ENST00000296098 PFN2P35080 140 aa16.46■□□□□ 0.23
TRIM54-201ENST00000296098 CD164L2Q6UWJ8 174 aa16.46■□□□□ 0.23
TRIM54-201ENST00000296098 REG3AQ06141 175 aa16.45■□□□□ 0.22
TRIM54-201ENST00000296098 CHCHD10Q8WYQ3 142 aaPredicted RBP16.45■□□□□ 0.22
TRIM54-201ENST00000296098 CCL18P55774 89 aa16.44■□□□□ 0.22
TRIM54-201ENST00000296098 LELP1Q5T871 98 aa16.44■□□□□ 0.22
TRIM54-201ENST00000296098 KRTAP24-1Q3LI83 254 aa16.43■□□□□ 0.22
TRIM54-201ENST00000296098 CDIP1Q9H305 208 aa16.43■□□□□ 0.22
TRIM54-201ENST00000296098 IGKV2-28A0A075B6P5 120 aa16.43■□□□□ 0.22
TRIM54-201ENST00000296098 IGKV2D-28P01615 120 aa16.43■□□□□ 0.22
TRIM54-201ENST00000296098 KRTAP10-11P60412 298 aa16.43■□□□□ 0.22
TRIM54-201ENST00000296098 TRRAPQ9Y4A5 3859 aa16.42■□□□□ 0.22
TRIM54-201ENST00000296098 LINC00337Q8N6G1 96 aa16.42■□□□□ 0.22
TRIM54-201ENST00000296098 UBE2WQ96B02 151 aa16.42■□□□□ 0.22
TRIM54-201ENST00000296098 F8P00451 2351 aa16.42■□□□□ 0.22
TRIM54-201ENST00000296098 IGLV10-54A0A075B6I4 117 aa16.41■□□□□ 0.22
TRIM54-201ENST00000296098 TEX49A0A1B0GTD5 131 aa16.4■□□□□ 0.22
TRIM54-201ENST00000296098 CKS1BP61024 79 aa16.39■□□□□ 0.21
TRIM54-201ENST00000296098 RETNQ9HD89 108 aa16.38■□□□□ 0.21
TRIM54-201ENST00000296098 MALP21145 153 aa16.38■□□□□ 0.21
TRIM54-201ENST00000296098 RPL28P46779 137 aaKnown RBP16.38■□□□□ 0.21
TRIM54-201ENST00000296098 CFAP161Q6P656 301 aa16.38■□□□□ 0.21
TRIM54-201ENST00000296098 CXCL5P42830 114 aa16.37■□□□□ 0.21
TRIM54-201ENST00000296098 EGFEM1PQ0D2K5 195 aa16.36■□□□□ 0.21
TRIM54-201ENST00000296098 KIAA0087Q14695 138 aa16.36■□□□□ 0.21
TRIM54-201ENST00000296098 SCGB1A1P11684 91 aa16.36■□□□□ 0.21
TRIM54-201ENST00000296098 TRACP01848 142 aa16.35■□□□□ 0.21
TRIM54-201ENST00000296098 C3orf56Q8N813 242 aa16.35■□□□□ 0.21
TRIM54-201ENST00000296098 SMIM11BQ8TCY0 68 aa16.31■□□□□ 0.2
TRIM54-201ENST00000296098 FAM218AQ96MZ4 157 aa16.31■□□□□ 0.2
TRIM54-201ENST00000296098 LYPD5Q6UWN5 251 aa16.31■□□□□ 0.2
TRIM54-201ENST00000296098 PRR34Q9NV39 138 aa16.31■□□□□ 0.2
TRIM54-201ENST00000296098 XGP55808 180 aa16.3■□□□□ 0.2
TRIM54-201ENST00000296098 COX17Q14061 63 aa16.3■□□□□ 0.2
TRIM54-201ENST00000296098 KLK12Q9UKR0 248 aa16.3■□□□□ 0.2
TRIM54-201ENST00000296098 H3BNG1 76 aa16.29■□□□□ 0.2
TRIM54-201ENST00000296098 TRAV8-4A0A0B4J246 113 aa16.28■□□□□ 0.2
TRIM54-201ENST00000296098 MT-ATP8P03928 68 aa16.27■□□□□ 0.2
TRIM54-201ENST00000296098 OR13C6PQ8NH95 151 aa16.26■□□□□ 0.19
TRIM54-201ENST00000296098 KLK5Q9Y337 293 aaPredicted RBP16.26■□□□□ 0.19
TRIM54-201ENST00000296098 DEFB121Q5J5C9 76 aa16.26■□□□□ 0.19
TRIM54-201ENST00000296098 KPRPQ5T749 579 aaPredicted RBP16.26■□□□□ 0.19
TRIM54-201ENST00000296098 Q6ZTC4 211 aa16.26■□□□□ 0.19
TRIM54-201ENST00000296098 SPAG11BQ08648 103 aa16.25■□□□□ 0.19
TRIM54-201ENST00000296098 ENHOQ6UWT2 76 aa16.25■□□□□ 0.19
TRIM54-201ENST00000296098 H0YGX0 51 aa16.23■□□□□ 0.19
TRIM54-201ENST00000296098 BAALC-AS2P0C853 105 aa16.22■□□□□ 0.19
TRIM54-201ENST00000296098 C9orf116Q5BN46 136 aaPredicted RBP16.22■□□□□ 0.19
TRIM54-201ENST00000296098 NDUFC2O95298 119 aa16.21■□□□□ 0.18
TRIM54-201ENST00000296098 A0A087WYN8 130 aa16.19■□□□□ 0.18
TRIM54-201ENST00000296098 WFDC10BQ8IUB3 73 aa16.19■□□□□ 0.18
TRIM54-201ENST00000296098 C6orf223Q8N319 242 aa16.19■□□□□ 0.18
TRIM54-201ENST00000296098 Q9HAA7 133 aa16.19■□□□□ 0.18
TRIM54-201ENST00000296098 A0A0J9YWU9 116 aa16.18■□□□□ 0.18
TRIM54-201ENST00000296098 FAM240AA0A1B0GVK7 77 aa16.18■□□□□ 0.18
TRIM54-201ENST00000296098 DNAL4O96015 105 aa16.18■□□□□ 0.18
TRIM54-201ENST00000296098 C10orf25Q5T742 122 aa16.18■□□□□ 0.18
TRIM54-201ENST00000296098 UNQ6190/PRO20217Q6UXQ8 127 aa16.18■□□□□ 0.18
TRIM54-201ENST00000296098 FLNBO75369 2602 aaKnown RBP16.17■□□□□ 0.18
TRIM54-201ENST00000296098 MUC7Q8TAX7 377 aa16.16■□□□□ 0.18
TRIM54-201ENST00000296098 CYSRT1A8MQ03 144 aa16.16■□□□□ 0.18
TRIM54-201ENST00000296098 LINC00526Q96FQ7 95 aa16.16■□□□□ 0.18
TRIM54-201ENST00000296098 FBN1P35555 2871 aaKnown RBP16.15■□□□□ 0.18
TRIM54-201ENST00000296098 C22orf24Q9Y442 160 aa16.15■□□□□ 0.18
TRIM54-201ENST00000296098 PRR3P79522 188 aaKnown RBP16.14■□□□□ 0.17
TRIM54-201ENST00000296098 NANOS2P60321 138 aaKnown RBP16.14■□□□□ 0.17
TRIM54-201ENST00000296098 C11orf45Q8TAV5 145 aa16.12■□□□□ 0.17
TRIM54-201ENST00000296098 STAB1Q9NY15 2570 aa16.12■□□□□ 0.17
TRIM54-201ENST00000296098 DEFB131BA0A096LNP1 70 aa16.11■□□□□ 0.17
TRIM54-201ENST00000296098 LECT2O14960 151 aa16.11■□□□□ 0.17
TRIM54-201ENST00000296098 TMEM126AQ9H061 195 aa16.11■□□□□ 0.17
TRIM54-201ENST00000296098 SNCGO76070 127 aa16.11■□□□□ 0.17
TRIM54-201ENST00000296098 CMYA5Q8N3K9 4069 aa16.1■□□□□ 0.17
TRIM54-201ENST00000296098 GVQW2A0A096LPI5 108 aaPredicted RBP16.1■□□□□ 0.17
TRIM54-201ENST00000296098 ESRGQ1W209 222 aa16.1■□□□□ 0.17
TRIM54-201ENST00000296098 NCR3O14931 201 aa16.09■□□□□ 0.17
TRIM54-201ENST00000296098 Q8NDZ9 215 aa16.09■□□□□ 0.17
TRIM54-201ENST00000296098 C15orf53Q8NAA6 179 aa16.08■□□□□ 0.16
TRIM54-201ENST00000296098 PKD1L1Q8TDX9 2849 aa16.07■□□□□ 0.16
TRIM54-201ENST00000296098 INAFM2P0DMQ5 153 aa16.07■□□□□ 0.16
TRIM54-201ENST00000296098 ACYP1P07311 99 aa16.06■□□□□ 0.16
TRIM54-201ENST00000296098 KRTAP26-1Q6PEX3 210 aa16.06■□□□□ 0.16
TRIM54-201ENST00000296098 C6orf48Q9UBA6 75 aa16.06■□□□□ 0.16
TRIM54-201ENST00000296098 S100A7L2Q5SY68 101 aa16.04■□□□□ 0.16
TRIM54-201ENST00000296098 DNAH3Q8TD57 4116 aa16.03■□□□□ 0.16
TRIM54-201ENST00000296098 TENM3Q9P273 2699 aa16.03■□□□□ 0.16
TRIM54-201ENST00000296098 ZNF561-AS1K7EIQ3 104 aa16.02■□□□□ 0.16
TRIM54-201ENST00000296098 LINC01556Q5JQF7 62 aa16.02■□□□□ 0.16
TRIM54-201ENST00000296098 MAST4O15021 2626 aa16.02■□□□□ 0.16
TRIM54-201ENST00000296098 A0A1B0GX51 115 aa16.02■□□□□ 0.15
TRIM54-201ENST00000296098 HIGD2BQ4VC39 106 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms