RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SS18Q15532 418 aa13.85□□□□□ -0.19
VPS53-201ENST00000291074 COX7A2LO14548 114 aa13.84□□□□□ -0.19
VPS53-201ENST00000291074 SND1-IT1Q9HBX3 110 aa13.84□□□□□ -0.19
VPS53-201ENST00000291074 UBE2WQ96B02 151 aa13.84□□□□□ -0.19
VPS53-201ENST00000291074 IGKV2-28A0A075B6P5 120 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 IGKV2D-28P01615 120 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 NHLRC4P0CG21 123 aaPredicted RBP13.83□□□□□ -0.2
VPS53-201ENST00000291074 HTN3P15516 51 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 LINC00269Q8N2A0 174 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 LINC00337Q8N6G1 96 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 H3BT86 120 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 IGHV4-30-4P0DP06 118 aa13.83□□□□□ -0.2
VPS53-201ENST00000291074 CCL18P55774 89 aa13.82□□□□□ -0.2
VPS53-201ENST00000291074 C6orf226Q5I0X4 101 aa13.82□□□□□ -0.2
VPS53-201ENST00000291074 F8P00451 2351 aa13.82□□□□□ -0.2
VPS53-201ENST00000291074 IGLV10-54A0A075B6I4 117 aa13.81□□□□□ -0.2
VPS53-201ENST00000291074 IBA57-AS1B1ANH7 110 aa13.81□□□□□ -0.2
VPS53-201ENST00000291074 CRPP02741 224 aa13.8□□□□□ -0.2
VPS53-201ENST00000291074 ATP5G1P05496 136 aa13.8□□□□□ -0.2
VPS53-201ENST00000291074 PPDPFQ9H3Y8 114 aa13.8□□□□□ -0.2
VPS53-201ENST00000291074 MIFP14174 115 aa13.8□□□□□ -0.2
VPS53-201ENST00000291074 WFDC9Q8NEX5 89 aa13.8□□□□□ -0.2
VPS53-201ENST00000291074 FAM218AQ96MZ4 157 aa13.79□□□□□ -0.2
VPS53-201ENST00000291074 ANGP03950 147 aaKnown RBP13.79□□□□□ -0.2
VPS53-201ENST00000291074 TRAV13-2A0A0B4J235 113 aa13.77□□□□□ -0.2
VPS53-201ENST00000291074 CCDC179H3BU77 68 aa13.77□□□□□ -0.2
VPS53-201ENST00000291074 SPART-AS1P0CW21 52 aa13.77□□□□□ -0.21
VPS53-201ENST00000291074 CHCHD10Q8WYQ3 142 aaPredicted RBP13.76□□□□□ -0.21
VPS53-201ENST00000291074 REG3AQ06141 175 aa13.76□□□□□ -0.21
VPS53-201ENST00000291074 Q8IZM0 81 aa13.76□□□□□ -0.21
VPS53-201ENST00000291074 TRAV8-4A0A0B4J246 113 aa13.74□□□□□ -0.21
VPS53-201ENST00000291074 OXLD1Q5BKU9 147 aa13.74□□□□□ -0.21
VPS53-201ENST00000291074 WIPF1O43516 503 aa13.73□□□□□ -0.21
VPS53-201ENST00000291074 RPL28P46779 137 aaKnown RBP13.73□□□□□ -0.21
VPS53-201ENST00000291074 CD164L2Q6UWJ8 174 aa13.73□□□□□ -0.21
VPS53-201ENST00000291074 SMIM11BQ8TCY0 68 aa13.73□□□□□ -0.21
VPS53-201ENST00000291074 FLNBO75369 2602 aaKnown RBP13.73□□□□□ -0.21
VPS53-201ENST00000291074 SMIM20Q8N5G0 67 aa13.72□□□□□ -0.21
VPS53-201ENST00000291074 NDUFV3P56181 108 aaKnown RBP13.72□□□□□ -0.21
VPS53-201ENST00000291074 MRPL23Q16540 153 aaKnown RBP13.72□□□□□ -0.21
VPS53-201ENST00000291074 KIAA0087Q14695 138 aa13.71□□□□□ -0.21
VPS53-201ENST00000291074 RETNQ9HD89 108 aa13.71□□□□□ -0.21
VPS53-201ENST00000291074 GAGE2BQ13066 116 aa13.71□□□□□ -0.22
VPS53-201ENST00000291074 GAGE2EQ4V326 116 aa13.71□□□□□ -0.22
VPS53-201ENST00000291074 GAGE2DQ9UEU5 116 aa13.71□□□□□ -0.22
VPS53-201ENST00000291074 PKD1L1Q8TDX9 2849 aa13.71□□□□□ -0.22
VPS53-201ENST00000291074 TRACP01848 142 aa13.7□□□□□ -0.22
VPS53-201ENST00000291074 CFAP161Q6P656 301 aa13.7□□□□□ -0.22
VPS53-201ENST00000291074 Q9HAA7 133 aa13.7□□□□□ -0.22
VPS53-201ENST00000291074 STAB1Q9NY15 2570 aa13.69□□□□□ -0.22
VPS53-201ENST00000291074 LINC01561Q8N1V8 128 aa13.69□□□□□ -0.22
VPS53-201ENST00000291074 OR13C6PQ8NH95 151 aa13.69□□□□□ -0.22
VPS53-201ENST00000291074 SNCGO76070 127 aa13.68□□□□□ -0.22
VPS53-201ENST00000291074 MALP21145 153 aa13.68□□□□□ -0.22
VPS53-201ENST00000291074 KRTAP10-11P60412 298 aa13.68□□□□□ -0.22
VPS53-201ENST00000291074 C9orf116Q5BN46 136 aaPredicted RBP13.68□□□□□ -0.22
VPS53-201ENST00000291074 BAALC-AS2P0C853 105 aa13.67□□□□□ -0.22
VPS53-201ENST00000291074 LELP1Q5T871 98 aa13.67□□□□□ -0.22
VPS53-201ENST00000291074 A0A087WYN8 130 aa13.67□□□□□ -0.22
VPS53-201ENST00000291074 DEFB121Q5J5C9 76 aa13.67□□□□□ -0.22
VPS53-201ENST00000291074 C22orf24Q9Y442 160 aa13.67□□□□□ -0.22
VPS53-201ENST00000291074 PRR3P79522 188 aaKnown RBP13.66□□□□□ -0.22
VPS53-201ENST00000291074 TTC32Q5I0X7 151 aa13.66□□□□□ -0.22
VPS53-201ENST00000291074 C3orf56Q8N813 242 aa13.66□□□□□ -0.22
VPS53-201ENST00000291074 KLK12Q9UKR0 248 aa13.66□□□□□ -0.22
VPS53-201ENST00000291074 LINC00526Q96FQ7 95 aa13.65□□□□□ -0.22
VPS53-201ENST00000291074 FBN1P35555 2871 aaKnown RBP13.64□□□□□ -0.23
VPS53-201ENST00000291074 TENM3Q9P273 2699 aa13.64□□□□□ -0.23
VPS53-201ENST00000291074 C6orf223Q8N319 242 aa13.63□□□□□ -0.23
VPS53-201ENST00000291074 ANK2Q01484 3957 aa13.62□□□□□ -0.23
VPS53-201ENST00000291074 KRTAP24-1Q3LI83 254 aa13.62□□□□□ -0.23
VPS53-201ENST00000291074 C15orf53Q8NAA6 179 aa13.62□□□□□ -0.23
VPS53-201ENST00000291074 C10orf25Q5T742 122 aa13.61□□□□□ -0.23
VPS53-201ENST00000291074 LYPD5Q6UWN5 251 aa13.61□□□□□ -0.23
VPS53-201ENST00000291074 CXCL5P42830 114 aa13.6□□□□□ -0.23
VPS53-201ENST00000291074 ENHOQ6UWT2 76 aa13.59□□□□□ -0.23
VPS53-201ENST00000291074 SPAG11BQ08648 103 aa13.59□□□□□ -0.23
VPS53-201ENST00000291074 MAST4O15021 2626 aa13.58□□□□□ -0.23
VPS53-201ENST00000291074 UNQ6190/PRO20217Q6UXQ8 127 aa13.58□□□□□ -0.23
VPS53-201ENST00000291074 Q8NDZ9 215 aa13.58□□□□□ -0.23
VPS53-201ENST00000291074 PRR34Q9NV39 138 aa13.58□□□□□ -0.23
VPS53-201ENST00000291074 LECT2O14960 151 aa13.58□□□□□ -0.24
VPS53-201ENST00000291074 DNAL4O96015 105 aa13.58□□□□□ -0.24
VPS53-201ENST00000291074 FAM240AA0A1B0GVK7 77 aa13.57□□□□□ -0.24
VPS53-201ENST00000291074 H0YGX0 51 aa13.57□□□□□ -0.24
VPS53-201ENST00000291074 NANOS2P60321 138 aaKnown RBP13.57□□□□□ -0.24
VPS53-201ENST00000291074 COX17Q14061 63 aa13.57□□□□□ -0.24
VPS53-201ENST00000291074 Q6ZTC4 211 aa13.57□□□□□ -0.24
VPS53-201ENST00000291074 CMYA5Q8N3K9 4069 aa13.57□□□□□ -0.24
VPS53-201ENST00000291074 KPRPQ5T749 579 aaPredicted RBP13.56□□□□□ -0.24
VPS53-201ENST00000291074 WFDC10BQ8IUB3 73 aa13.56□□□□□ -0.24
VPS53-201ENST00000291074 C9orf129Q5T035 196 aaKnown RBP13.56□□□□□ -0.24
VPS53-201ENST00000291074 KLK5Q9Y337 293 aaPredicted RBP13.56□□□□□ -0.24
VPS53-201ENST00000291074 SLPIP03973 132 aa13.55□□□□□ -0.24
VPS53-201ENST00000291074 CYSRT1A8MQ03 144 aa13.54□□□□□ -0.24
VPS53-201ENST00000291074 NCR3O14931 201 aa13.54□□□□□ -0.24
VPS53-201ENST00000291074 NOTCH1P46531 2555 aa13.52□□□□□ -0.24
VPS53-201ENST00000291074 NDUFC2O95298 119 aa13.52□□□□□ -0.25
VPS53-201ENST00000291074 EGFEM1PQ0D2K5 195 aa13.51□□□□□ -0.25
VPS53-201ENST00000291074 SMCR5Q8TEV8 140 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms