RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 CD164L2Q6UWJ8 174 aa13.09□□□□□ -0.31
YBX3-201ENST00000228251 C3orf56Q8N813 242 aa13.09□□□□□ -0.31
YBX3-201ENST00000228251 CARD19Q96LW7 228 aa13.09□□□□□ -0.31
YBX3-201ENST00000228251 RETNQ9HD89 108 aa13.09□□□□□ -0.31
YBX3-201ENST00000228251 J3QR89 54 aa13.08□□□□□ -0.32
YBX3-201ENST00000228251 HTN3P15516 51 aa13.08□□□□□ -0.32
YBX3-201ENST00000228251 REG3AQ06141 175 aa13.07□□□□□ -0.32
YBX3-201ENST00000228251 KIAA0087Q14695 138 aa13.07□□□□□ -0.32
YBX3-201ENST00000228251 LST1O00453 97 aa13.07□□□□□ -0.32
YBX3-201ENST00000228251 COX6CP09669 75 aa13.07□□□□□ -0.32
YBX3-201ENST00000228251 CHCHD10Q8WYQ3 142 aaPredicted RBP13.07□□□□□ -0.32
YBX3-201ENST00000228251 ANKRD29Q8N6D5 301 aa13.06□□□□□ -0.32
YBX3-201ENST00000228251 C11orf68Q9H3H3 251 aaKnown RBP13.06□□□□□ -0.32
YBX3-201ENST00000228251 IGKV2-28A0A075B6P5 120 aa13.05□□□□□ -0.32
YBX3-201ENST00000228251 H3BNG1 76 aa13.05□□□□□ -0.32
YBX3-201ENST00000228251 IGKV2D-28P01615 120 aa13.05□□□□□ -0.32
YBX3-201ENST00000228251 ANGP03950 147 aaKnown RBP13.05□□□□□ -0.32
YBX3-201ENST00000228251 PPDPFLQ8WWR9 84 aa13.05□□□□□ -0.32
YBX3-201ENST00000228251 TRBV10-2A0A0K0K1G8 114 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 CCL18P55774 89 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 CLEC2BQ92478 149 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 PRR34Q9NV39 138 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 TENM3Q9P273 2699 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 COX7A2LO14548 114 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 LINC00158P58513 81 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 C6orf226Q5I0X4 101 aa13.04□□□□□ -0.32
YBX3-201ENST00000228251 LYPD5Q6UWN5 251 aa13.03□□□□□ -0.32
YBX3-201ENST00000228251 SPATA25Q9BR10 227 aa13.03□□□□□ -0.32
YBX3-201ENST00000228251 LINC00337Q8N6G1 96 aa13.02□□□□□ -0.32
YBX3-201ENST00000228251 SND1-IT1Q9HBX3 110 aa13.02□□□□□ -0.32
YBX3-201ENST00000228251 C2orf82Q6UX34 121 aa13.01□□□□□ -0.33
YBX3-201ENST00000228251 IGLV10-54A0A075B6I4 117 aa13□□□□□ -0.33
YBX3-201ENST00000228251 TRAV13-2A0A0B4J235 113 aa13□□□□□ -0.33
YBX3-201ENST00000228251 GAGE12HA6NDE8 117 aa12.99□□□□□ -0.33
YBX3-201ENST00000228251 PFN2P35080 140 aa12.99□□□□□ -0.33
YBX3-201ENST00000228251 Q6ZTC4 211 aa12.99□□□□□ -0.33
YBX3-201ENST00000228251 H3BT86 120 aa12.98□□□□□ -0.33
YBX3-201ENST00000228251 CXCL5P42830 114 aa12.98□□□□□ -0.33
YBX3-201ENST00000228251 RPL28P46779 137 aaKnown RBP12.98□□□□□ -0.33
YBX3-201ENST00000228251 PCP4P48539 62 aa12.98□□□□□ -0.33
YBX3-201ENST00000228251 KPRPQ5T749 579 aaPredicted RBP12.97□□□□□ -0.33
YBX3-201ENST00000228251 ENHOQ6UWT2 76 aa12.97□□□□□ -0.33
YBX3-201ENST00000228251 CRPP02741 224 aa12.97□□□□□ -0.33
YBX3-201ENST00000228251 KLK5Q9Y337 293 aaPredicted RBP12.97□□□□□ -0.33
YBX3-201ENST00000228251 KLK12Q9UKR0 248 aa12.95□□□□□ -0.34
YBX3-201ENST00000228251 COX17Q14061 63 aa12.94□□□□□ -0.34
YBX3-201ENST00000228251 NTN5Q8WTR8 489 aaPredicted RBP12.94□□□□□ -0.34
YBX3-201ENST00000228251 CDIP1Q9H305 208 aa12.94□□□□□ -0.34
YBX3-201ENST00000228251 CKS1BP61024 79 aa12.94□□□□□ -0.34
YBX3-201ENST00000228251 A0A0J9YWU9 116 aa12.93□□□□□ -0.34
YBX3-201ENST00000228251 MALP21145 153 aa12.93□□□□□ -0.34
YBX3-201ENST00000228251 TRACP01848 142 aa12.92□□□□□ -0.34
YBX3-201ENST00000228251 CFAP161Q6P656 301 aa12.92□□□□□ -0.34
YBX3-201ENST00000228251 FAM218AQ96MZ4 157 aa12.92□□□□□ -0.34
YBX3-201ENST00000228251 COL6A5A8TX70 2615 aa12.92□□□□□ -0.34
YBX3-201ENST00000228251 WFDC10BQ8IUB3 73 aa12.92□□□□□ -0.34
YBX3-201ENST00000228251 SMIM11BQ8TCY0 68 aa12.91□□□□□ -0.34
YBX3-201ENST00000228251 NOTCH1P46531 2555 aa12.9□□□□□ -0.34
YBX3-201ENST00000228251 TEX49A0A1B0GTD5 131 aa12.89□□□□□ -0.35
YBX3-201ENST00000228251 KRTAP26-1Q6PEX3 210 aa12.89□□□□□ -0.35
YBX3-201ENST00000228251 TRAV8-4A0A0B4J246 113 aa12.89□□□□□ -0.35
YBX3-201ENST00000228251 NANOS2P60321 138 aaKnown RBP12.89□□□□□ -0.35
YBX3-201ENST00000228251 SIGMAR1Q99720 223 aa12.89□□□□□ -0.35
YBX3-201ENST00000228251 HUWE1Q7Z6Z7 4374 aaKnown RBP12.88□□□□□ -0.35
YBX3-201ENST00000228251 SPAG11BQ08648 103 aa12.88□□□□□ -0.35
YBX3-201ENST00000228251 ESRGQ1W209 222 aa12.88□□□□□ -0.35
YBX3-201ENST00000228251 DEFB121Q5J5C9 76 aa12.88□□□□□ -0.35
YBX3-201ENST00000228251 UBE2WQ96B02 151 aa12.88□□□□□ -0.35
YBX3-201ENST00000228251 NBEAL1Q6ZS30 2694 aa12.87□□□□□ -0.35
YBX3-201ENST00000228251 NDUFC2O95298 119 aa12.87□□□□□ -0.35
YBX3-201ENST00000228251 C9orf116Q5BN46 136 aaPredicted RBP12.87□□□□□ -0.35
YBX3-201ENST00000228251 C10orf25Q5T742 122 aa12.87□□□□□ -0.35
YBX3-201ENST00000228251 C6orf223Q8N319 242 aa12.87□□□□□ -0.35
YBX3-201ENST00000228251 C11orf45Q8TAV5 145 aa12.86□□□□□ -0.35
YBX3-201ENST00000228251 C22orf24Q9Y442 160 aa12.86□□□□□ -0.35
YBX3-201ENST00000228251 DEFB131BA0A096LNP1 70 aa12.85□□□□□ -0.35
YBX3-201ENST00000228251 UNQ6190/PRO20217Q6UXQ8 127 aa12.85□□□□□ -0.35
YBX3-201ENST00000228251 MUC7Q8TAX7 377 aa12.85□□□□□ -0.35
YBX3-201ENST00000228251 GVQW2A0A096LPI5 108 aaPredicted RBP12.84□□□□□ -0.35
YBX3-201ENST00000228251 C21orf62-AS1Q17RA5 79 aa12.84□□□□□ -0.35
YBX3-201ENST00000228251 Q8NDZ9 215 aa12.84□□□□□ -0.35
YBX3-201ENST00000228251 TM2D3Q9BRN9 247 aa12.84□□□□□ -0.35
YBX3-201ENST00000228251 H0YGX0 51 aa12.82□□□□□ -0.36
YBX3-201ENST00000228251 LINC00526Q96FQ7 95 aa12.82□□□□□ -0.36
YBX3-201ENST00000228251 K7EIL1 84 aa12.81□□□□□ -0.36
YBX3-201ENST00000228251 LINC01556Q5JQF7 62 aa12.81□□□□□ -0.36
YBX3-201ENST00000228251 PRR3P79522 188 aaKnown RBP12.8□□□□□ -0.36
YBX3-201ENST00000228251 A0A087WYN8 130 aa12.79□□□□□ -0.36
YBX3-201ENST00000228251 SCGB1A1P11684 91 aa12.79□□□□□ -0.36
YBX3-201ENST00000228251 XGP55808 180 aa12.79□□□□□ -0.36
YBX3-201ENST00000228251 PRB2P02812 416 aaPredicted RBP12.79□□□□□ -0.36
YBX3-201ENST00000228251 OR13C6PQ8NH95 151 aa12.79□□□□□ -0.36
YBX3-201ENST00000228251 BAALC-AS2P0C853 105 aa12.78□□□□□ -0.36
YBX3-201ENST00000228251 C6orf48Q9UBA6 75 aa12.78□□□□□ -0.36
YBX3-201ENST00000228251 DNAH1Q9P2D7 4330 aa12.77□□□□□ -0.36
YBX3-201ENST00000228251 C15orf56Q8N910 161 aa12.76□□□□□ -0.37
YBX3-201ENST00000228251 Q9HAA7 133 aa12.76□□□□□ -0.37
YBX3-201ENST00000228251 MT-ATP8P03928 68 aa12.75□□□□□ -0.37
YBX3-201ENST00000228251 DNAH10OSP0CZ25 163 aa12.75□□□□□ -0.37
YBX3-201ENST00000228251 TRAV10A0A0B4J240 114 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms