RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 IFITM2Q01629 132 aa13.31□□□□□ -0.28
VTI1B-201ENST00000216456 K7EMI3 77 aa13.3□□□□□ -0.28
VTI1B-201ENST00000216456 NPSP0C0P6 89 aa13.3□□□□□ -0.28
VTI1B-201ENST00000216456 TIMM17AQ99595 171 aa13.3□□□□□ -0.28
VTI1B-201ENST00000216456 TMEM218A2RU14 115 aa13.29□□□□□ -0.28
VTI1B-201ENST00000216456 HERVK_113P63121 156 aa13.29□□□□□ -0.28
VTI1B-201ENST00000216456 GEMIN7Q9H840 131 aaKnown RBP13.29□□□□□ -0.28
VTI1B-201ENST00000216456 C22orf24Q9Y442 160 aa13.29□□□□□ -0.28
VTI1B-201ENST00000216456 SCGB3A1Q96QR1 104 aa13.28□□□□□ -0.28
VTI1B-201ENST00000216456 SMIM1B2RUZ4 78 aa13.26□□□□□ -0.29
VTI1B-201ENST00000216456 F8VRH5 84 aa13.25□□□□□ -0.29
VTI1B-201ENST00000216456 ERASQ7Z444 233 aa13.25□□□□□ -0.29
VTI1B-201ENST00000216456 PAPPA-AS1Q5QFB9 102 aa13.24□□□□□ -0.29
VTI1B-201ENST00000216456 SEC11AP67812 179 aa13.23□□□□□ -0.29
VTI1B-201ENST00000216456 SPINK8P0C7L1 97 aa13.22□□□□□ -0.29
VTI1B-201ENST00000216456 UQCC3Q6UW78 93 aa13.22□□□□□ -0.29
VTI1B-201ENST00000216456 IGLV1-50A0A075B6I6 118 aa13.21□□□□□ -0.29
VTI1B-201ENST00000216456 COX7B2Q8TF08 81 aa13.21□□□□□ -0.29
VTI1B-201ENST00000216456 CST9LQ9H4G1 147 aa13.21□□□□□ -0.29
VTI1B-201ENST00000216456 TRAV9-1A0A075B6T8 112 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 TINCRA0A1B0GVN0 87 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 LINC01546A6NGU7 62 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 ZNF861PO60384 105 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 G0S2P27469 103 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 GNB1LQ9BYB4 327 aa13.2□□□□□ -0.3
VTI1B-201ENST00000216456 IGLV5-45A0A087WSX0 123 aa13.19□□□□□ -0.3
VTI1B-201ENST00000216456 RAB5BP61020 215 aa13.19□□□□□ -0.3
VTI1B-201ENST00000216456 GAGE10A6NGK3 116 aa13.18□□□□□ -0.3
VTI1B-201ENST00000216456 RPL37AP8A6NKH3 93 aa13.18□□□□□ -0.3
VTI1B-201ENST00000216456 PDZD11Q5EBL8 140 aa13.18□□□□□ -0.3
VTI1B-201ENST00000216456 MRPL55Q7Z7F7 128 aaKnown RBP13.18□□□□□ -0.3
VTI1B-201ENST00000216456 SEC11CQ9BY50 192 aa13.18□□□□□ -0.3
VTI1B-201ENST00000216456 MRPL18Q9H0U6 180 aaKnown RBP13.18□□□□□ -0.3
VTI1B-201ENST00000216456 S100PP25815 95 aa13.17□□□□□ -0.3
VTI1B-201ENST00000216456 CXCL5P42830 114 aa13.16□□□□□ -0.3
VTI1B-201ENST00000216456 FABP9Q0Z7S8 132 aa13.16□□□□□ -0.3
VTI1B-201ENST00000216456 LBHQ53QV2 105 aaPredicted RBP13.16□□□□□ -0.3
VTI1B-201ENST00000216456 COMMD7Q86VX2 200 aa13.16□□□□□ -0.3
VTI1B-201ENST00000216456 LINC00167Q96N53 147 aa13.16□□□□□ -0.3
VTI1B-201ENST00000216456 SCO1O75880 301 aa13.15□□□□□ -0.3
VTI1B-201ENST00000216456 FA2HQ7L5A8 372 aa13.15□□□□□ -0.3
VTI1B-201ENST00000216456 A0A096LNJ9 63 aa13.14□□□□□ -0.31
VTI1B-201ENST00000216456 NUPR1O60356 82 aa13.14□□□□□ -0.31
VTI1B-201ENST00000216456 PMVKQ15126 192 aa13.14□□□□□ -0.31
VTI1B-201ENST00000216456 URB1-AS1Q96HZ7 61 aa13.14□□□□□ -0.31
VTI1B-201ENST00000216456 TP73-AS1Q9UF72 201 aa13.13□□□□□ -0.31
VTI1B-201ENST00000216456 A0A087X002 238 aa13.12□□□□□ -0.31
VTI1B-201ENST00000216456 RPS10P5Q9NQ39 176 aa13.12□□□□□ -0.31
VTI1B-201ENST00000216456 SMCO4Q9NRQ5 59 aa13.12□□□□□ -0.31
VTI1B-201ENST00000216456 ANAPC11Q9NYG5 84 aa13.12□□□□□ -0.31
VTI1B-201ENST00000216456 BCE1O60756 84 aa13.11□□□□□ -0.31
VTI1B-201ENST00000216456 PMCHL1Q16048 86 aa13.11□□□□□ -0.31
VTI1B-201ENST00000216456 TSPAN13O95857 204 aa13.09□□□□□ -0.31
VTI1B-201ENST00000216456 RPL13AP40429 203 aaKnown RBP13.09□□□□□ -0.31
VTI1B-201ENST00000216456 NDUFA6P56556 154 aa13.09□□□□□ -0.31
VTI1B-201ENST00000216456 PRR4Q16378 134 aa13.09□□□□□ -0.31
VTI1B-201ENST00000216456 C10orf91Q5T1B1 145 aa13.09□□□□□ -0.31
VTI1B-201ENST00000216456 PFN2P35080 140 aa13.08□□□□□ -0.32
VTI1B-201ENST00000216456 CARHSP1Q9Y2V2 147 aaKnown RBP13.08□□□□□ -0.32
VTI1B-201ENST00000216456 IGLC3P0DOY3 106 aa13.07□□□□□ -0.32
VTI1B-201ENST00000216456 ZNF22P17026 224 aaPredicted RBP13.06□□□□□ -0.32
VTI1B-201ENST00000216456 RPL28P46779 137 aaKnown RBP13.06□□□□□ -0.32
VTI1B-201ENST00000216456 COX19Q49B96 90 aa13.06□□□□□ -0.32
VTI1B-201ENST00000216456 C18orf32Q8TCD1 76 aa13.06□□□□□ -0.32
VTI1B-201ENST00000216456 IGLV5-37A0A075B6J1 123 aa13.05□□□□□ -0.32
VTI1B-201ENST00000216456 IGLV5-39A0A0G2JS06 123 aa13.05□□□□□ -0.32
VTI1B-201ENST00000216456 LINC01549A6NIU2 74 aa13.05□□□□□ -0.32
VTI1B-201ENST00000216456 IGKV2-28A0A075B6P5 120 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 H3BRM9 83 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 ATP5LO75964 103 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 IGKV2D-28P01615 120 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 RHEBQ15382 184 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 Q8NDZ9 215 aa13.04□□□□□ -0.32
VTI1B-201ENST00000216456 ZNF625Q96I27 306 aaPredicted RBP13.04□□□□□ -0.32
VTI1B-201ENST00000216456 KRTAP13-1Q8IUC0 172 aa13.03□□□□□ -0.32
VTI1B-201ENST00000216456 NKAPP1Q8N9T2 125 aa13.03□□□□□ -0.32
VTI1B-201ENST00000216456 TRAPPC1Q9Y5R8 145 aa13.03□□□□□ -0.32
VTI1B-201ENST00000216456 C11orf86A6NJI1 115 aa13.01□□□□□ -0.33
VTI1B-201ENST00000216456 LINC00614P0C842 121 aa13.01□□□□□ -0.33
VTI1B-201ENST00000216456 KRTAP13-2Q52LG2 175 aa13□□□□□ -0.33
VTI1B-201ENST00000216456 SND1-IT1Q9HBX3 110 aa13□□□□□ -0.33
VTI1B-201ENST00000216456 HBDP02042 147 aa12.99□□□□□ -0.33
VTI1B-201ENST00000216456 VPREB1P12018 145 aa12.99□□□□□ -0.33
VTI1B-201ENST00000216456 UBE2AP49459 152 aa12.99□□□□□ -0.33
VTI1B-201ENST00000216456 TYMSOSQ8TAI1 123 aa12.99□□□□□ -0.33
VTI1B-201ENST00000216456 ERG28Q9UKR5 140 aa12.99□□□□□ -0.33
VTI1B-201ENST00000216456 TMEM238C9JI98 176 aa12.98□□□□□ -0.33
VTI1B-201ENST00000216456 CRYGAP11844 174 aa12.98□□□□□ -0.33
VTI1B-201ENST00000216456 PRLHP81277 87 aa12.98□□□□□ -0.33
VTI1B-201ENST00000216456 BAGE3Q86Y29 109 aa12.97□□□□□ -0.33
VTI1B-201ENST00000216456 MUC2Q02817 5179 aa12.97□□□□□ -0.33
VTI1B-201ENST00000216456 APOC3P02656 99 aa12.95□□□□□ -0.34
VTI1B-201ENST00000216456 TMEM170BQ5T4T1 132 aa12.95□□□□□ -0.34
VTI1B-201ENST00000216456 A0A0U1RRA0 63 aa12.92□□□□□ -0.34
VTI1B-201ENST00000216456 FAM19A1Q7Z5A9 133 aa12.92□□□□□ -0.34
VTI1B-201ENST00000216456 TMEM126AQ9H061 195 aa12.92□□□□□ -0.34
VTI1B-201ENST00000216456 M0R378 163 aa12.91□□□□□ -0.34
VTI1B-201ENST00000216456 RETNLBQ9BQ08 111 aa12.91□□□□□ -0.34
VTI1B-201ENST00000216456 CHTOPQ9Y3Y2 248 aaKnown RBP12.9□□□□□ -0.34
VTI1B-201ENST00000216456 YPEL4Q96NS1 127 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms