RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PTPN13Q12923 2485 aa14.28□□□□□ -0.12
SYNGAP1-227ENST00000638142 TRACP01848 142 aa14.27□□□□□ -0.12
SYNGAP1-227ENST00000638142 TEX15Q9BXT5 2789 aa14.27□□□□□ -0.12
SYNGAP1-227ENST00000638142 NAV2Q8IVL1 2488 aa14.27□□□□□ -0.12
SYNGAP1-227ENST00000638142 A0A1W2PRX2 142 aa14.27□□□□□ -0.13
SYNGAP1-227ENST00000638142 IMUPQ9GZP8 106 aa14.26□□□□□ -0.13
SYNGAP1-227ENST00000638142 CMC4P56277 68 aaPredicted RBP14.26□□□□□ -0.13
SYNGAP1-227ENST00000638142 ZNF843Q8N446 348 aa14.26□□□□□ -0.13
SYNGAP1-227ENST00000638142 C16orf74Q96GX8 76 aa14.26□□□□□ -0.13
SYNGAP1-227ENST00000638142 TENM4Q6N022 2769 aa14.26□□□□□ -0.13
SYNGAP1-227ENST00000638142 DNAJC9-AS1A6NH13 148 aa14.25□□□□□ -0.13
SYNGAP1-227ENST00000638142 C11orf44Q8N8P7 122 aa14.25□□□□□ -0.13
SYNGAP1-227ENST00000638142 PF4P02776 101 aa14.24□□□□□ -0.13
SYNGAP1-227ENST00000638142 LRRK2Q5S007 2527 aa14.24□□□□□ -0.13
SYNGAP1-227ENST00000638142 CENPEQ02224 2701 aa14.24□□□□□ -0.13
SYNGAP1-227ENST00000638142 TRBV6-4A0A1B0GX49 114 aa14.23□□□□□ -0.13
SYNGAP1-227ENST00000638142 PLAC8L1A1L4L8 177 aa14.23□□□□□ -0.13
SYNGAP1-227ENST00000638142 GIG44P09565 113 aaPredicted RBP14.23□□□□□ -0.13
SYNGAP1-227ENST00000638142 TRGV2A0A075B6R0 118 aa14.23□□□□□ -0.13
SYNGAP1-227ENST00000638142 KRTAP1-3Q8IUG1 177 aa14.23□□□□□ -0.13
SYNGAP1-227ENST00000638142 TRAV13-2A0A0B4J235 113 aa14.22□□□□□ -0.13
SYNGAP1-227ENST00000638142 FAM222AQ5U5X8 452 aa14.22□□□□□ -0.13
SYNGAP1-227ENST00000638142 CHCHD5Q9BSY4 110 aa14.22□□□□□ -0.13
SYNGAP1-227ENST00000638142 HIST2H2BCQ6DN03 193 aa14.21□□□□□ -0.13
SYNGAP1-227ENST00000638142 COX7B2Q8TF08 81 aa14.21□□□□□ -0.13
SYNGAP1-227ENST00000638142 BAHCC1Q9P281 2608 aa14.2□□□□□ -0.14
SYNGAP1-227ENST00000638142 AKAP9Q99996 3911 aa14.2□□□□□ -0.14
SYNGAP1-227ENST00000638142 LINC00643Q86TS7 51 aa14.2□□□□□ -0.14
SYNGAP1-227ENST00000638142 FAM110AQ9BQ89 295 aa14.2□□□□□ -0.14
SYNGAP1-227ENST00000638142 BAALC-AS2P0C853 105 aa14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 RPL28P46779 137 aaKnown RBP14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 SDIM1Q6ZPB5 146 aa14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 OVOL2Q9BRP0 275 aa14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 LOC100131303A0A0U1RQF7 123 aa14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 CRPP02741 224 aa14.19□□□□□ -0.14
SYNGAP1-227ENST00000638142 ABCA12Q86UK0 2595 aa14.18□□□□□ -0.14
SYNGAP1-227ENST00000638142 WNK1Q9H4A3 2382 aa14.18□□□□□ -0.14
SYNGAP1-227ENST00000638142 MIR7-3HGQ8N6C7 128 aa14.18□□□□□ -0.14
SYNGAP1-227ENST00000638142 SMCR5Q8TEV8 140 aa14.18□□□□□ -0.14
SYNGAP1-227ENST00000638142 FAM218AQ96MZ4 157 aa14.18□□□□□ -0.14
SYNGAP1-227ENST00000638142 TRGV4A0A0C4DH28 118 aa14.17□□□□□ -0.14
SYNGAP1-227ENST00000638142 ESM1Q9NQ30 184 aa14.17□□□□□ -0.14
SYNGAP1-227ENST00000638142 C22orf24Q9Y442 160 aa14.17□□□□□ -0.14
SYNGAP1-227ENST00000638142 UBR5O95071 2799 aaPredicted RBP14.17□□□□□ -0.14
SYNGAP1-227ENST00000638142 FAM236AA0A1B0GUQ0 79 aa14.16□□□□□ -0.14
SYNGAP1-227ENST00000638142 FAM236BA0A1B0GV22 79 aa14.16□□□□□ -0.14
SYNGAP1-227ENST00000638142 SND1-IT1Q9HBX3 110 aa14.16□□□□□ -0.14
SYNGAP1-227ENST00000638142 TOMM7Q9P0U1 55 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 TRBV6-8A0A0A6YYG3 113 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 RPL35AP18077 110 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 LINC00337Q8N6G1 96 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 CSNK1G2-AS1Q8NCQ2 148 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 WFDC10AQ9H1F0 79 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 C19orf73Q9NVV2 129 aa14.15□□□□□ -0.14
SYNGAP1-227ENST00000638142 IGKV2-28A0A075B6P5 120 aa14.14□□□□□ -0.15
SYNGAP1-227ENST00000638142 IGHV3OR16-9A0A0B4J2B5 98 aa14.14□□□□□ -0.15
SYNGAP1-227ENST00000638142 IGKV2D-28P01615 120 aa14.14□□□□□ -0.15
SYNGAP1-227ENST00000638142 IGLV4-60A0A075B6I1 120 aa14.13□□□□□ -0.15
SYNGAP1-227ENST00000638142 IGLV1-51P01701 117 aa14.13□□□□□ -0.15
SYNGAP1-227ENST00000638142 INAFM2P0DMQ5 153 aa14.13□□□□□ -0.15
SYNGAP1-227ENST00000638142 TMEM126AQ9H061 195 aa14.13□□□□□ -0.15
SYNGAP1-227ENST00000638142 TLN2Q9Y4G6 2542 aa14.13□□□□□ -0.15
SYNGAP1-227ENST00000638142 IGKV3OR2-268A0A0C4DH90 116 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 LINC00158P58513 81 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 FHL2Q14192 279 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 SMIM20Q8N5G0 67 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 C2CD3Q4AC94 2353 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 IBA57-AS1B1ANH7 110 aa14.12□□□□□ -0.15
SYNGAP1-227ENST00000638142 A0A087WZ39 114 aa14.11□□□□□ -0.15
SYNGAP1-227ENST00000638142 PLA2G2AP14555 144 aa14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 LINC01006Q8NI28 216 aa14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 MALP21145 153 aa14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 CXCL5P42830 114 aa14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 NOTCH3Q9UM47 2321 aa14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 FLNBO75369 2602 aaKnown RBP14.1□□□□□ -0.15
SYNGAP1-227ENST00000638142 ATP5G1P05496 136 aa14.09□□□□□ -0.15
SYNGAP1-227ENST00000638142 WFDC11Q8NEX6 87 aa14.09□□□□□ -0.15
SYNGAP1-227ENST00000638142 C16orf95Q9H693 158 aa14.09□□□□□ -0.15
SYNGAP1-227ENST00000638142 CCL18P55774 89 aa14.09□□□□□ -0.15
SYNGAP1-227ENST00000638142 C5orf38Q86SI9 138 aa14.08□□□□□ -0.15
SYNGAP1-227ENST00000638142 Q9HAA7 133 aa14.08□□□□□ -0.15
SYNGAP1-227ENST00000638142 SONP18583 2426 aaKnown RBP14.08□□□□□ -0.16
SYNGAP1-227ENST00000638142 SMIM11BQ8TCY0 68 aa14.08□□□□□ -0.16
SYNGAP1-227ENST00000638142 H0YGX0 51 aa14.07□□□□□ -0.16
SYNGAP1-227ENST00000638142 DNAL4O96015 105 aa14.07□□□□□ -0.16
SYNGAP1-227ENST00000638142 ZNF469Q96JG9 3925 aaPredicted RBP14.07□□□□□ -0.16
SYNGAP1-227ENST00000638142 ITPR3Q14573 2671 aa14.06□□□□□ -0.16
SYNGAP1-227ENST00000638142 SETXQ7Z333 2677 aaKnown RBP14.05□□□□□ -0.16
SYNGAP1-227ENST00000638142 RNASE1P07998 156 aaKnown RBP14.05□□□□□ -0.16
SYNGAP1-227ENST00000638142 C3orf22Q8N5N4 141 aa14.05□□□□□ -0.16
SYNGAP1-227ENST00000638142 LINC00959A0A1B0GUT2 108 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 J3QKU1 62 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 GAGE2AQ6NT46 116 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 HECTD1Q9ULT8 2610 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 JMJD1CQ15652 2540 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 A0A087WYN8 130 aa14.04□□□□□ -0.16
SYNGAP1-227ENST00000638142 APCP25054 2843 aa14.03□□□□□ -0.16
SYNGAP1-227ENST00000638142 UQCRQO14949 82 aa14.03□□□□□ -0.16
SYNGAP1-227ENST00000638142 PFN2P35080 140 aa14.03□□□□□ -0.16
SYNGAP1-227ENST00000638142 NF1P21359 2839 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms