RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 C7orf33Q8WU49 177 aa11.09□□□□□ -0.63
PNKP-230ENST00000638016 IGHV3OR16-9A0A0B4J2B5 98 aa11.08□□□□□ -0.64
PNKP-230ENST00000638016 RAB5AP20339 215 aa11.08□□□□□ -0.64
PNKP-230ENST00000638016 PTTG1IPP53801 180 aa11.08□□□□□ -0.64
PNKP-230ENST00000638016 ZC2HC1BQ5TFG8 222 aa11.08□□□□□ -0.64
PNKP-230ENST00000638016 IGLV4-3A0A075B6K6 122 aa11.07□□□□□ -0.64
PNKP-230ENST00000638016 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.07□□□□□ -0.64
PNKP-230ENST00000638016 MT1HL1P0DM35 61 aa11.07□□□□□ -0.64
PNKP-230ENST00000638016 PRR3P79522 188 aaKnown RBP11.07□□□□□ -0.64
PNKP-230ENST00000638016 ORAOV1Q8WV07 137 aa11.07□□□□□ -0.64
PNKP-230ENST00000638016 MAP1LC3AQ9H492 121 aa11.07□□□□□ -0.64
PNKP-230ENST00000638016 PRSS47A8MTI9 375 aa11.06□□□□□ -0.64
PNKP-230ENST00000638016 IFI27P40305 119 aaPredicted RBP11.06□□□□□ -0.64
PNKP-230ENST00000638016 LOC107984640A0A0U1RRK4 108 aa11.05□□□□□ -0.64
PNKP-230ENST00000638016 A0A1W2PNN7 141 aa11.05□□□□□ -0.64
PNKP-230ENST00000638016 C2orf48Q96LS8 159 aa11.05□□□□□ -0.64
PNKP-230ENST00000638016 TMEM218A2RU14 115 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 APOMO95445 188 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 KIAA1644Q3SXP7 199 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 LINC00242Q5T6M2 205 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 C10orf25Q5T742 122 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 Q8N8P6 123 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 LINC00474Q9P2X8 69 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 LAMTOR2Q9Y2Q5 125 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 TNXBP22105 4242 aa11.04□□□□□ -0.64
PNKP-230ENST00000638016 RPL18AQ02543 176 aaKnown RBP11.03□□□□□ -0.64
PNKP-230ENST00000638016 C2orf66Q6UXQ4 117 aa11.03□□□□□ -0.64
PNKP-230ENST00000638016 LINC00173Q6ZV60 143 aa11.03□□□□□ -0.64
PNKP-230ENST00000638016 PYGO1Q9Y3Y4 419 aa11.03□□□□□ -0.64
PNKP-230ENST00000638016 OR10D4PQ8NGN7 298 aa11.02□□□□□ -0.65
PNKP-230ENST00000638016 TMEM141Q96I45 108 aa11.02□□□□□ -0.65
PNKP-230ENST00000638016 CTDSP1Q9GZU7 261 aa11.02□□□□□ -0.65
PNKP-230ENST00000638016 UQCC3Q6UW78 93 aa11.01□□□□□ -0.65
PNKP-230ENST00000638016 UNQ6190/PRO20217Q6UXQ8 127 aa11.01□□□□□ -0.65
PNKP-230ENST00000638016 PKIGQ9Y2B9 76 aa11.01□□□□□ -0.65
PNKP-230ENST00000638016 UBE2D1P51668 147 aa11□□□□□ -0.65
PNKP-230ENST00000638016 C9orf116Q5BN46 136 aaPredicted RBP11□□□□□ -0.65
PNKP-230ENST00000638016 IMMP2LQ96T52 175 aa11□□□□□ -0.65
PNKP-230ENST00000638016 C6orf48Q9UBA6 75 aa11□□□□□ -0.65
PNKP-230ENST00000638016 CYSLTR1Q9Y271 337 aa11□□□□□ -0.65
PNKP-230ENST00000638016 TGIF2-C20orf24A0A0A6YYL0 155 aa10.99□□□□□ -0.65
PNKP-230ENST00000638016 KIAA0087Q14695 138 aa10.99□□□□□ -0.65
PNKP-230ENST00000638016 TEX43Q6ZNM6 134 aa10.99□□□□□ -0.65
PNKP-230ENST00000638016 COMMD7Q86VX2 200 aa10.99□□□□□ -0.65
PNKP-230ENST00000638016 MRPL35Q9NZE8 188 aaKnown RBP10.99□□□□□ -0.65
PNKP-230ENST00000638016 A0A087WZ39 114 aa10.98□□□□□ -0.65
PNKP-230ENST00000638016 ODF1Q14990 250 aa10.98□□□□□ -0.65
PNKP-230ENST00000638016 FAM168BA1KXE4 195 aa10.97□□□□□ -0.65
PNKP-230ENST00000638016 IGIPA6NJ69 53 aa10.97□□□□□ -0.65
PNKP-230ENST00000638016 NDUFA1O15239 70 aa10.97□□□□□ -0.65
PNKP-230ENST00000638016 C2orf82Q6UX34 121 aa10.97□□□□□ -0.65
PNKP-230ENST00000638016 PHF5AQ7RTV0 110 aaKnown RBP10.97□□□□□ -0.65
PNKP-230ENST00000638016 AMELXQ99217 191 aa10.97□□□□□ -0.65
PNKP-230ENST00000638016 RNF151Q2KHN1 245 aa10.96□□□□□ -0.65
PNKP-230ENST00000638016 ORMDL2Q53FV1 153 aa10.96□□□□□ -0.65
PNKP-230ENST00000638016 SERTAD4-AS1Q5TG53 156 aa10.96□□□□□ -0.65
PNKP-230ENST00000638016 Q6ZRP5 223 aa10.96□□□□□ -0.65
PNKP-230ENST00000638016 SEC11CQ9BY50 192 aa10.96□□□□□ -0.65
PNKP-230ENST00000638016 C2orf88Q9BSF0 95 aa10.95□□□□□ -0.66
PNKP-230ENST00000638016 NXT2Q9NPJ8 142 aaKnown RBP10.95□□□□□ -0.66
PNKP-230ENST00000638016 Q6ZN92 141 aa10.94□□□□□ -0.66
PNKP-230ENST00000638016 VCX2Q9H322 139 aa10.94□□□□□ -0.66
PNKP-230ENST00000638016 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
PNKP-230ENST00000638016 KRTAP11-1Q8IUC1 163 aa10.93□□□□□ -0.66
PNKP-230ENST00000638016 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
PNKP-230ENST00000638016 TRAV9-1A0A075B6T8 112 aa10.92□□□□□ -0.66
PNKP-230ENST00000638016 SRSF9Q13242 221 aaKnown RBP eCLIP10.92□□□□□ -0.66
PNKP-230ENST00000638016 KRTAP7-1Q8IUC3 87 aa10.92□□□□□ -0.66
PNKP-230ENST00000638016 PSORS1C2Q9UIG4 136 aa10.92□□□□□ -0.66
PNKP-230ENST00000638016 PLA2G2DQ9UNK4 145 aa10.92□□□□□ -0.66
PNKP-230ENST00000638016 K7EMI3 77 aa10.91□□□□□ -0.66
PNKP-230ENST00000638016 TLX1NBP0CAT3 122 aa10.91□□□□□ -0.66
PNKP-230ENST00000638016 FAM19A5Q7Z5A7 132 aaPredicted RBP10.91□□□□□ -0.66
PNKP-230ENST00000638016 TOMM6Q96B49 74 aa10.91□□□□□ -0.66
PNKP-230ENST00000638016 UBR4Q5T4S7 5183 aa10.91□□□□□ -0.66
PNKP-230ENST00000638016 F8WDY8 70 aa10.9□□□□□ -0.66
PNKP-230ENST00000638016 C10orf91Q5T1B1 145 aa10.9□□□□□ -0.66
PNKP-230ENST00000638016 LINC01600Q96MT4 127 aa10.9□□□□□ -0.66
PNKP-230ENST00000638016 ALKBH7Q9BT30 221 aaPredicted RBP10.9□□□□□ -0.66
PNKP-230ENST00000638016 TOMM7Q9P0U1 55 aa10.9□□□□□ -0.66
PNKP-230ENST00000638016 S100PP25815 95 aa10.89□□□□□ -0.67
PNKP-230ENST00000638016 SPINK6Q6UWN8 80 aa10.89□□□□□ -0.67
PNKP-230ENST00000638016 TIMM17AQ99595 171 aa10.89□□□□□ -0.67
PNKP-230ENST00000638016 GNB1LQ9BYB4 327 aa10.89□□□□□ -0.67
PNKP-230ENST00000638016 CDKN2A-AS1Q9UH64 79 aa10.89□□□□□ -0.67
PNKP-230ENST00000638016 NPSP0C0P6 89 aa10.88□□□□□ -0.67
PNKP-230ENST00000638016 FAM19A3Q7Z5A8 133 aa10.88□□□□□ -0.67
PNKP-230ENST00000638016 RPS10P5Q9NQ39 176 aa10.88□□□□□ -0.67
PNKP-230ENST00000638016 CARHSP1Q9Y2V2 147 aaKnown RBP10.88□□□□□ -0.67
PNKP-230ENST00000638016 MT-ND6P03923 174 aa10.87□□□□□ -0.67
PNKP-230ENST00000638016 C1orf137Q5JT78 98 aa10.87□□□□□ -0.67
PNKP-230ENST00000638016 C9orf129Q5T035 196 aaKnown RBP10.87□□□□□ -0.67
PNKP-230ENST00000638016 LINC01561Q8N1V8 128 aa10.87□□□□□ -0.67
PNKP-230ENST00000638016 SCGB3A1Q96QR1 104 aa10.87□□□□□ -0.67
PNKP-230ENST00000638016 MRPL18Q9H0U6 180 aaKnown RBP10.87□□□□□ -0.67
PNKP-230ENST00000638016 TRBV30A0A0K0K1B3 111 aa10.86□□□□□ -0.67
PNKP-230ENST00000638016 LINC01546A6NGU7 62 aa10.85□□□□□ -0.67
PNKP-230ENST00000638016 NDUFC2-KCTD14E9PQ53 114 aa10.85□□□□□ -0.67
PNKP-230ENST00000638016 PRSS2P07478 247 aa10.85□□□□□ -0.67
PNKP-230ENST00000638016 FABP9Q0Z7S8 132 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms