RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 MAP1LC3AQ9H492 121 aa11.91□□□□□ -0.5
CLN6-221ENST00000637494 TGIF2-C20orf24A0A0A6YYL0 155 aa11.89□□□□□ -0.51
CLN6-221ENST00000637494 F8WDY8 70 aa11.89□□□□□ -0.51
CLN6-221ENST00000637494 PRR3P79522 188 aaKnown RBP11.89□□□□□ -0.51
CLN6-221ENST00000637494 ORAOV1Q8WV07 137 aa11.89□□□□□ -0.51
CLN6-221ENST00000637494 OPRPNQ99935 248 aaPredicted RBP11.89□□□□□ -0.51
CLN6-221ENST00000637494 LOC389332A0A1B0GUA5 103 aa11.88□□□□□ -0.51
CLN6-221ENST00000637494 RPL18AQ02543 176 aaKnown RBP11.88□□□□□ -0.51
CLN6-221ENST00000637494 PYGO1Q9Y3Y4 419 aa11.88□□□□□ -0.51
CLN6-221ENST00000637494 PRSS47A8MTI9 375 aa11.87□□□□□ -0.51
CLN6-221ENST00000637494 RNF151Q2KHN1 245 aa11.87□□□□□ -0.51
CLN6-221ENST00000637494 IGHV3OR16-9A0A0B4J2B5 98 aa11.86□□□□□ -0.51
CLN6-221ENST00000637494 Q6ZRP5 223 aa11.86□□□□□ -0.51
CLN6-221ENST00000637494 TMEM141Q96I45 108 aa11.86□□□□□ -0.51
CLN6-221ENST00000637494 NDUFA1O15239 70 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 CLLU1Q5K131 121 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 Q6ZN92 141 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 TEX43Q6ZNM6 134 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 FAM104AQ969W3 186 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 IMMP2LQ96T52 175 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 C2orf88Q9BSF0 95 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 CTDSP1Q9GZU7 261 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 PLA2G2DQ9UNK4 145 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 CYSLTR1Q9Y271 337 aa11.85□□□□□ -0.51
CLN6-221ENST00000637494 LRP1Q07954 4544 aaKnown RBP11.85□□□□□ -0.51
CLN6-221ENST00000637494 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.84□□□□□ -0.51
CLN6-221ENST00000637494 ORMDL2Q53FV1 153 aa11.84□□□□□ -0.51
CLN6-221ENST00000637494 Q8N8P6 123 aa11.84□□□□□ -0.51
CLN6-221ENST00000637494 MRPL35Q9NZE8 188 aaKnown RBP11.84□□□□□ -0.51
CLN6-221ENST00000637494 IGLV4-3A0A075B6K6 122 aa11.83□□□□□ -0.52
CLN6-221ENST00000637494 K7EMI3 77 aa11.83□□□□□ -0.52
CLN6-221ENST00000637494 G0S2P27469 103 aa11.82□□□□□ -0.52
CLN6-221ENST00000637494 SPINK6Q6UWN8 80 aa11.82□□□□□ -0.52
CLN6-221ENST00000637494 C2orf66Q6UXQ4 117 aa11.82□□□□□ -0.52
CLN6-221ENST00000637494 A0A0J9YXV3 536 aa11.81□□□□□ -0.52
CLN6-221ENST00000637494 REG3GQ6UW15 175 aa11.81□□□□□ -0.52
CLN6-221ENST00000637494 UQCC3Q6UW78 93 aa11.81□□□□□ -0.52
CLN6-221ENST00000637494 NXT2Q9NPJ8 142 aaKnown RBP11.81□□□□□ -0.52
CLN6-221ENST00000637494 FAT3Q8TDW7 4589 aa11.8□□□□□ -0.52
CLN6-221ENST00000637494 A0A087WZ39 114 aa11.8□□□□□ -0.52
CLN6-221ENST00000637494 C9orf116Q5BN46 136 aaPredicted RBP11.8□□□□□ -0.52
CLN6-221ENST00000637494 LINC00242Q5T6M2 205 aa11.8□□□□□ -0.52
CLN6-221ENST00000637494 VCX2Q9H322 139 aa11.8□□□□□ -0.52
CLN6-221ENST00000637494 PKHD1L1Q86WI1 4243 aa11.79□□□□□ -0.52
CLN6-221ENST00000637494 A0A1W2PNN7 141 aa11.79□□□□□ -0.52
CLN6-221ENST00000637494 NPSP0C0P6 89 aa11.79□□□□□ -0.52
CLN6-221ENST00000637494 MT1HL1P0DM35 61 aa11.79□□□□□ -0.52
CLN6-221ENST00000637494 PAPPA-AS1Q5QFB9 102 aa11.79□□□□□ -0.52
CLN6-221ENST00000637494 TRAV9-1A0A075B6T8 112 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 MT-ND6P03923 174 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 S100PP25815 95 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 UBE2D1P51668 147 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 UNQ6190/PRO20217Q6UXQ8 127 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 LINC01600Q96MT4 127 aa11.77□□□□□ -0.53
CLN6-221ENST00000637494 TMEM218A2RU14 115 aa11.76□□□□□ -0.53
CLN6-221ENST00000637494 PRSS2P07478 247 aa11.76□□□□□ -0.53
CLN6-221ENST00000637494 LINC01561Q8N1V8 128 aa11.76□□□□□ -0.53
CLN6-221ENST00000637494 PACRGQ96M98 296 aaPredicted RBP11.76□□□□□ -0.53
CLN6-221ENST00000637494 TLX1NBP0CAT3 122 aa11.75□□□□□ -0.53
CLN6-221ENST00000637494 SEC11AP67812 179 aa11.75□□□□□ -0.53
CLN6-221ENST00000637494 C10orf25Q5T742 122 aa11.75□□□□□ -0.53
CLN6-221ENST00000637494 TRBV30A0A0K0K1B3 111 aa11.74□□□□□ -0.53
CLN6-221ENST00000637494 GAGE2EQ4V326 116 aa11.74□□□□□ -0.53
CLN6-221ENST00000637494 AMELXQ99217 191 aa11.74□□□□□ -0.53
CLN6-221ENST00000637494 C6orf48Q9UBA6 75 aa11.74□□□□□ -0.53
CLN6-221ENST00000637494 GAGE2DQ9UEU5 116 aa11.74□□□□□ -0.53
CLN6-221ENST00000637494 PHF5AQ7RTV0 110 aaKnown RBP11.73□□□□□ -0.53
CLN6-221ENST00000637494 IGIPA6NJ69 53 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 ADCYAP1P18509 176 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 CKS1BP61024 79 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 SRSF9Q13242 221 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLN6-221ENST00000637494 KIAA0087Q14695 138 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 KIAA1644Q3SXP7 199 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 SEC11CQ9BY50 192 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 PSORS1C2Q9UIG4 136 aa11.72□□□□□ -0.53
CLN6-221ENST00000637494 HERVK_113P63121 156 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 C1orf137Q5JT78 98 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 ZC2HC1BQ5TFG8 222 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 LINC00173Q6ZV60 143 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 TIMM17AQ99595 171 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 GEMIN7Q9H840 131 aaKnown RBP11.71□□□□□ -0.53
CLN6-221ENST00000637494 TOMM7Q9P0U1 55 aa11.71□□□□□ -0.53
CLN6-221ENST00000637494 LINC01549A6NIU2 74 aa11.7□□□□□ -0.54
CLN6-221ENST00000637494 COX19Q49B96 90 aa11.7□□□□□ -0.54
CLN6-221ENST00000637494 C6orf226Q5I0X4 101 aa11.7□□□□□ -0.54
CLN6-221ENST00000637494 C2orf82Q6UX34 121 aa11.7□□□□□ -0.54
CLN6-221ENST00000637494 FAM19A5Q7Z5A7 132 aaPredicted RBP11.7□□□□□ -0.54
CLN6-221ENST00000637494 TOMM6Q96B49 74 aa11.7□□□□□ -0.54
CLN6-221ENST00000637494 NDUFC2-KCTD14E9PQ53 114 aa11.69□□□□□ -0.54
CLN6-221ENST00000637494 IFITM2Q01629 132 aa11.69□□□□□ -0.54
CLN6-221ENST00000637494 FAM19A3Q7Z5A8 133 aa11.69□□□□□ -0.54
CLN6-221ENST00000637494 SCGB3A1Q96QR1 104 aa11.69□□□□□ -0.54
CLN6-221ENST00000637494 GNB1LQ9BYB4 327 aa11.69□□□□□ -0.54
CLN6-221ENST00000637494 ALKBH7Q9BT30 221 aaPredicted RBP11.68□□□□□ -0.54
CLN6-221ENST00000637494 ERASQ7Z444 233 aa11.67□□□□□ -0.54
CLN6-221ENST00000637494 COMMD7Q86VX2 200 aa11.67□□□□□ -0.54
CLN6-221ENST00000637494 Q8IZM0 81 aa11.67□□□□□ -0.54
CLN6-221ENST00000637494 FAM168BA1KXE4 195 aa11.66□□□□□ -0.54
CLN6-221ENST00000637494 UBE2BP63146 152 aa11.66□□□□□ -0.54
CLN6-221ENST00000637494 M0QXV9 152 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms