RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CCL25O15444 150 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 CYB5BO43169 146 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 PITX3O75364 302 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 ATP6V1G2O95670 118 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TCRAP04437 139 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SLC25A5P05141 298 aaKnown RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 AKAIN1P0CW23 69 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SLC25A4P12235 298 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SLC25A6P12236 298 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 RPL7P18124 248 aaKnown RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 EVI2AP22794 236 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TSPOP30536 169 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 NUP62P37198 522 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 AKR1C3P42330 323 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 XCL1P47992 114 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SULT1A2P50226 295 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2D1P51668 147 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 NKX2-5P52952 324 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SPCS3P61009 180 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2D3P61077 147 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 YPEL3P61236 119 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 B2MP61769 119 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 RANP62826 216 aaKnown RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2D2P62837 147 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SPAG11BQ08648 103 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TRAM1Q15629 374 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 IAH1Q2TAA2 248 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 C9orf116Q5BN46 136 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 C1orf194Q5T5A4 169 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM78Q5T7P6 136 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 C10orf113Q5VZT2 155 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 C2orf82Q6UX34 121 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM14EPQ6UXP3 125 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 LINC00269Q8N2A0 174 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 ATP6V0E2Q8NHE4 81 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SUN5Q8TC36 379 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SMIM4Q8WVI0 70 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 DIRAS2Q96HU8 199 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 ZNF625Q96I27 306 aaPredicted RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 CARD19Q96LW7 228 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TSC22D3Q99576 134 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 NPCDR1Q9BY65 106 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 RNASE7Q9H1E1 156 aaKnown RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 DPH3P1Q9H4G8 78 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 XAGE1AQ9HD64 81 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TREM1Q9NP99 234 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SLC39A9Q9NUM3 307 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 SCN3BQ9NY72 215 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 PSENENQ9NZ42 101 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 GSKIPQ9P0R6 139 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 C6orf48Q9UBA6 75 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 PRO0255Q9UI72 69 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 HHLA3Q9XRX5 114 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TPRKBQ9Y3C4 175 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 CHTOPQ9Y3Y2 248 aaKnown RBP0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM56-RWDD3S4R434 201 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 ARL2-SNX15V9GYD0 113 aa0.39□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV20OR9-2A0A075B6H5 130 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV19A0A075B6N1 114 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TRAV30A0A087WSZ9 112 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A087WX48 190 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A087WXM4 84 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TRAV1-2A0A0B4J238 106 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV10-1A0A0K0K1A3 114 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A1B0GXF2 115 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 DUXBA0A1W2PPF3 345 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 C9orf170A2RU37 121 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MAP1LC3B2A6NCE7 125 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 SMIM9A6NGZ8 99 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 DISC1C4P0D8 188 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM238C9JI98 176 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM262E9PQX1 116 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 H7C2G1 150 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 M0R2P5 195 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 NCR3O14931 201 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 HYPMO75409 117 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 SFT2D2O95562 160 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 APOA1P02647 267 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MT2AP02795 61 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MT-ND6P03923 174 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TCRBP04435 133 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MT1FP04733 61 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 ARMS2P0C7Q2 107 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MGST1P10620 155 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 IL7P13232 177 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TPT1P13693 172 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 S100A4P26447 101 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 ATP6V0CP27449 155 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 CDC34P49427 236 aaPredicted RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 CRIP1P50238 77 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 FOXA3P55318 350 aaPredicted RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 RPL39P62891 51 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2BP63146 152 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MSMO1Q15800 293 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 KHDC3LQ587J8 217 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 PCOTHQ58A44 107 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 Q5BKY6 102 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 CENPWQ5EE01 88 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 FAM74A1Q5RGS3 127 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TRIQKQ629K1 86 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms