RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TIMM17BO60830 172 aa9.1□□□□□ -0.95
LIG1-221ENST00000613670 SS18Q15532 418 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 IGLV10-54A0A075B6I4 117 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 SMIM1B2RUZ4 78 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 BRI3O95415 125 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 WFDC10AQ9H1F0 79 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 A0A1B0GX51 115 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 ESM1Q9NQ30 184 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 LAMTOR3Q9UHA4 124 aa9.09□□□□□ -0.95
LIG1-221ENST00000613670 DCHS2Q6V1P9 2916 aa9.08□□□□□ -0.96
LIG1-221ENST00000613670 LITAFQ99732 161 aa9.08□□□□□ -0.96
LIG1-221ENST00000613670 Q6YL49 198 aa9.08□□□□□ -0.96
LIG1-221ENST00000613670 TRBV10-1A0A0K0K1A3 114 aa9.08□□□□□ -0.96
LIG1-221ENST00000613670 Q6Q795 121 aa9.07□□□□□ -0.96
LIG1-221ENST00000613670 TRACP01848 142 aa9.07□□□□□ -0.96
LIG1-221ENST00000613670 C4orf3Q8WVX3 66 aa9.06□□□□□ -0.96
LIG1-221ENST00000613670 CITED2Q99967 270 aaPredicted RBP9.06□□□□□ -0.96
LIG1-221ENST00000613670 NCR3O14931 201 aa9.06□□□□□ -0.96
LIG1-221ENST00000613670 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.06□□□□□ -0.96
LIG1-221ENST00000613670 NHLRC4P0CG21 123 aaPredicted RBP9.06□□□□□ -0.96
LIG1-221ENST00000613670 CDC42SE2Q9NRR3 84 aa9.05□□□□□ -0.96
LIG1-221ENST00000613670 H0YGX0 51 aa9.05□□□□□ -0.96
LIG1-221ENST00000613670 ODF3L2Q3SX64 289 aa9.05□□□□□ -0.96
LIG1-221ENST00000613670 ORMDL1Q9P0S3 153 aa9.05□□□□□ -0.96
LIG1-221ENST00000613670 M0QXV9 152 aa9.05□□□□□ -0.96
LIG1-221ENST00000613670 SVEP1Q4LDE5 3571 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 HRNRQ86YZ3 2850 aaPredicted RBP9.04□□□□□ -0.96
LIG1-221ENST00000613670 GYPEP15421 78 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 SOSTDC1Q6X4U4 206 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 FAM240AA0A1B0GVK7 77 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 ANGP03950 147 aaKnown RBP9.04□□□□□ -0.96
LIG1-221ENST00000613670 SMIM11BQ8TCY0 68 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 TMEM126AQ9H061 195 aa9.04□□□□□ -0.96
LIG1-221ENST00000613670 C1orf158Q8N1D5 194 aa9.03□□□□□ -0.96
LIG1-221ENST00000613670 IGHV4-31P0DP07 118 aa9.03□□□□□ -0.96
LIG1-221ENST00000613670 PLA2G2AP14555 144 aa9.03□□□□□ -0.96
LIG1-221ENST00000613670 HAMPP81172 84 aa9.03□□□□□ -0.96
LIG1-221ENST00000613670 C16orf74Q96GX8 76 aa9.02□□□□□ -0.96
LIG1-221ENST00000613670 PRORYQ9H606 182 aa9.02□□□□□ -0.96
LIG1-221ENST00000613670 hADV29S1A0JD25 119 aa9.02□□□□□ -0.97
LIG1-221ENST00000613670 DEFB4AO15263 64 aa9.02□□□□□ -0.97
LIG1-221ENST00000613670 ATOX1O00244 68 aa9.02□□□□□ -0.97
LIG1-221ENST00000613670 C11orf72Q8NBR9 251 aa9.02□□□□□ -0.97
LIG1-221ENST00000613670 CMC4P56277 68 aaPredicted RBP9.01□□□□□ -0.97
LIG1-221ENST00000613670 KLK5Q9Y337 293 aaPredicted RBP9.01□□□□□ -0.97
LIG1-221ENST00000613670 SPENQ96T58 3664 aaKnown RBP9.01□□□□□ -0.97
LIG1-221ENST00000613670 FLNCQ14315 2725 aa9.01□□□□□ -0.97
LIG1-221ENST00000613670 UQCRQO14949 82 aa9.01□□□□□ -0.97
LIG1-221ENST00000613670 CCL18P55774 89 aa9.01□□□□□ -0.97
LIG1-221ENST00000613670 C3orf22Q8N5N4 141 aa9.01□□□□□ -0.97
LIG1-221ENST00000613670 NTM-AS1Q6ZSK4 140 aa9□□□□□ -0.97
LIG1-221ENST00000613670 A0A087WYN8 130 aa9□□□□□ -0.97
LIG1-221ENST00000613670 FAM218AQ96MZ4 157 aa9□□□□□ -0.97
LIG1-221ENST00000613670 ITPR1Q14643 2758 aa9□□□□□ -0.97
LIG1-221ENST00000613670 IGLV4-60A0A075B6I1 120 aa9□□□□□ -0.97
LIG1-221ENST00000613670 UBL5Q9BZL1 73 aa9□□□□□ -0.97
LIG1-221ENST00000613670 A0A087WVE0 104 aa8.99□□□□□ -0.97
LIG1-221ENST00000613670 DEFB113Q30KQ7 82 aa8.99□□□□□ -0.97
LIG1-221ENST00000613670 LINC00337Q8N6G1 96 aa8.99□□□□□ -0.97
LIG1-221ENST00000613670 BEAN1Q3B7T3 259 aa8.99□□□□□ -0.97
LIG1-221ENST00000613670 CHD6Q8TD26 2715 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 TRBV6-8A0A0A6YYG3 113 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 IMUPQ9GZP8 106 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 IGLV5-39A0A0G2JS06 123 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 KRTAP10-9P60411 292 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 TRAV23DV6A0A075B6W5 121 aa8.98□□□□□ -0.97
LIG1-221ENST00000613670 PRR3P79522 188 aaKnown RBP8.98□□□□□ -0.97
LIG1-221ENST00000613670 TRAV25A0A0B4J276 109 aa8.97□□□□□ -0.97
LIG1-221ENST00000613670 F5H768 121 aa8.97□□□□□ -0.97
LIG1-221ENST00000613670 DNAJC9-AS1A6NH13 148 aa8.97□□□□□ -0.97
LIG1-221ENST00000613670 FASNP49327 2511 aaKnown RBP8.96□□□□□ -0.97
LIG1-221ENST00000613670 WFDC9Q8NEX5 89 aa8.96□□□□□ -0.97
LIG1-221ENST00000613670 WFDC11Q8NEX6 87 aa8.96□□□□□ -0.97
LIG1-221ENST00000613670 ZANQ9Y493 2812 aa8.96□□□□□ -0.98
LIG1-221ENST00000613670 IBA57-AS1B1ANH7 110 aa8.96□□□□□ -0.98
LIG1-221ENST00000613670 SHISA2Q6UWI4 295 aa8.96□□□□□ -0.98
LIG1-221ENST00000613670 TRBV7-7A0A0K0K1E9 115 aa8.95□□□□□ -0.98
LIG1-221ENST00000613670 RPL28P46779 137 aaKnown RBP8.95□□□□□ -0.98
LIG1-221ENST00000613670 LINC00526Q96FQ7 95 aa8.95□□□□□ -0.98
LIG1-221ENST00000613670 LINC00269Q8N2A0 174 aa8.95□□□□□ -0.98
LIG1-221ENST00000613670 IGLV5-45A0A087WSX0 123 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 CXCL5P42830 114 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 FAM222AQ5U5X8 452 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 LRRC75A-AS1Q8N1F1 130 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 TRBV6-4A0A1B0GX49 114 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 J3KT08 172 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 COX7CP15954 63 aa8.94□□□□□ -0.98
LIG1-221ENST00000613670 DAD1P61803 113 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 SMCR5Q8TEV8 140 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 FAM104AQ969W3 186 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 CELSR1Q9NYQ6 3014 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 LOC107984640A0A0U1RRK4 108 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 LINC00959A0A1B0GUT2 108 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 SVIPQ8NHG7 77 aa8.93□□□□□ -0.98
LIG1-221ENST00000613670 CSDC2Q9Y534 153 aaKnown RBP8.92□□□□□ -0.98
LIG1-221ENST00000613670 USP17L23D6RBM5 183 aa8.92□□□□□ -0.98
LIG1-221ENST00000613670 GHRHP01286 108 aa8.92□□□□□ -0.98
LIG1-221ENST00000613670 LINC00846Q9NV44 126 aa8.92□□□□□ -0.98
LIG1-221ENST00000613670 C6orf99Q4VX62 202 aa8.92□□□□□ -0.98
LIG1-221ENST00000613670 ENHOQ6UWT2 76 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms