RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 HIST1H2BNQ99877 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BMQ99879 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 MALP21145 153 aa10.86□□□□□ -0.67
SHKBP1-219ENST00000599575 LINC00242Q5T6M2 205 aa10.86□□□□□ -0.67
SHKBP1-219ENST00000599575 LINC01561Q8N1V8 128 aa10.86□□□□□ -0.67
SHKBP1-219ENST00000599575 GVQW2A0A096LPI5 108 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 IGLV5-52A0A0A0MRZ9 124 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 C16orf90A8MZG2 172 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 SERF1AO75920 110 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 HERVK_113P63121 156 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 CST9LQ9H4G1 147 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 DNAH11Q96DT5 4516 aa10.85□□□□□ -0.67
SHKBP1-219ENST00000599575 PRSS1P07477 247 aa10.84□□□□□ -0.67
SHKBP1-219ENST00000599575 CNBPP62633 177 aaKnown RBP10.84□□□□□ -0.67
SHKBP1-219ENST00000599575 PMCHL1Q16048 86 aa10.84□□□□□ -0.67
SHKBP1-219ENST00000599575 C15orf56Q8N910 161 aa10.84□□□□□ -0.67
SHKBP1-219ENST00000599575 A0A087WZ39 114 aa10.83□□□□□ -0.68
SHKBP1-219ENST00000599575 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.83□□□□□ -0.68
SHKBP1-219ENST00000599575 hDV102S1A0JD36 115 aa10.83□□□□□ -0.68
SHKBP1-219ENST00000599575 OR10D4PQ8NGN7 298 aa10.83□□□□□ -0.68
SHKBP1-219ENST00000599575 TINCRA0A1B0GVN0 87 aa10.82□□□□□ -0.68
SHKBP1-219ENST00000599575 LINC00310P59036 64 aa10.82□□□□□ -0.68
SHKBP1-219ENST00000599575 COA6Q5JTJ3 125 aaKnown RBP10.82□□□□□ -0.68
SHKBP1-219ENST00000599575 PACRGQ96M98 296 aaPredicted RBP10.82□□□□□ -0.68
SHKBP1-219ENST00000599575 GEMIN7Q9H840 131 aaKnown RBP10.82□□□□□ -0.68
SHKBP1-219ENST00000599575 PKHD1P08F94 4074 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 F8WDY8 70 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 ZNF561-AS1K7EIQ3 104 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 LEPROTL1O95214 131 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 GCSHP23434 173 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 C5orf38Q86SI9 138 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 IFI27L1Q96BM0 104 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 HSPB8Q9UJY1 196 aa10.81□□□□□ -0.68
SHKBP1-219ENST00000599575 TRAV12-1A0A0B4J245 112 aa10.8□□□□□ -0.68
SHKBP1-219ENST00000599575 ZC2HC1BQ5TFG8 222 aa10.8□□□□□ -0.68
SHKBP1-219ENST00000599575 FAM19A2Q8N3H0 131 aa10.8□□□□□ -0.68
SHKBP1-219ENST00000599575 IGHV3-64A0A075B6Q5 118 aa10.79□□□□□ -0.68
SHKBP1-219ENST00000599575 C2orf48Q96LS8 159 aa10.79□□□□□ -0.68
SHKBP1-219ENST00000599575 IGLV5-45A0A087WSX0 123 aa10.78□□□□□ -0.68
SHKBP1-219ENST00000599575 A0A0J9YXV3 536 aa10.78□□□□□ -0.68
SHKBP1-219ENST00000599575 COX6A2Q02221 97 aa10.78□□□□□ -0.68
SHKBP1-219ENST00000599575 C9orf163Q8N9P6 203 aa10.78□□□□□ -0.68
SHKBP1-219ENST00000599575 PKIGQ9Y2B9 76 aa10.78□□□□□ -0.68
SHKBP1-219ENST00000599575 IGLC3P0DOY3 106 aa10.77□□□□□ -0.69
SHKBP1-219ENST00000599575 NDUFA6P56556 154 aa10.77□□□□□ -0.69
SHKBP1-219ENST00000599575 H3BRM9 83 aa10.76□□□□□ -0.69
SHKBP1-219ENST00000599575 NUPR1O60356 82 aa10.76□□□□□ -0.69
SHKBP1-219ENST00000599575 HIGD2BQ4VC39 106 aa10.76□□□□□ -0.69
SHKBP1-219ENST00000599575 CDKN2A-AS1Q9UH64 79 aa10.76□□□□□ -0.69
SHKBP1-219ENST00000599575 SPAG11BQ08648 103 aa10.75□□□□□ -0.69
SHKBP1-219ENST00000599575 LINC00469Q8N7U9 141 aa10.75□□□□□ -0.69
SHKBP1-219ENST00000599575 ORAOV1Q8WV07 137 aa10.75□□□□□ -0.69
SHKBP1-219ENST00000599575 CHAC1Q9BUX1 264 aa10.74□□□□□ -0.69
SHKBP1-219ENST00000599575 CHTOPQ9Y3Y2 248 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-219ENST00000599575 BIRC6Q9NR09 4857 aa10.74□□□□□ -0.69
SHKBP1-219ENST00000599575 IGLV4-69A0A075B6H9 119 aa10.73□□□□□ -0.69
SHKBP1-219ENST00000599575 F8VRH5 84 aa10.73□□□□□ -0.69
SHKBP1-219ENST00000599575 CDK2AP2O75956 126 aa10.73□□□□□ -0.69
SHKBP1-219ENST00000599575 SLPIP03973 132 aa10.73□□□□□ -0.69
SHKBP1-219ENST00000599575 SYCNQ0VAF6 134 aa10.73□□□□□ -0.69
SHKBP1-219ENST00000599575 DNAH5Q8TE73 4624 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 RNF151Q2KHN1 245 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 Q8IZM0 81 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 CARD19Q96LW7 228 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 CAMK2N2Q96S95 79 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 MAP1LC3CQ9BXW4 147 aa10.72□□□□□ -0.69
SHKBP1-219ENST00000599575 DYNC1H1Q14204 4646 aaKnown RBP10.71□□□□□ -0.69
SHKBP1-219ENST00000599575 PRSS2P07478 247 aa10.71□□□□□ -0.69
SHKBP1-219ENST00000599575 FABP4P15090 132 aa10.71□□□□□ -0.69
SHKBP1-219ENST00000599575 FUSP35637 526 aaKnown RBP eCLIP10.71□□□□□ -0.69
SHKBP1-219ENST00000599575 KRTAP10-1P60331 282 aa10.71□□□□□ -0.69
SHKBP1-219ENST00000599575 NDUFA1O15239 70 aa10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 CXCL5P42830 114 aa10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 KIAA0087Q14695 138 aa10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 SDIM1Q6ZPB5 146 aa10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 Q6ZSA8 131 aa10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 MRPL35Q9NZE8 188 aaKnown RBP10.7□□□□□ -0.7
SHKBP1-219ENST00000599575 SMIM1B2RUZ4 78 aa10.69□□□□□ -0.7
SHKBP1-219ENST00000599575 PLNP26678 52 aa10.69□□□□□ -0.7
SHKBP1-219ENST00000599575 ODF1Q14990 250 aa10.69□□□□□ -0.7
SHKBP1-219ENST00000599575 C6orf226Q5I0X4 101 aa10.69□□□□□ -0.7
SHKBP1-219ENST00000599575 LRP1BQ9NZR2 4599 aa10.69□□□□□ -0.7
SHKBP1-219ENST00000599575 ZNF22P17026 224 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-219ENST00000599575 IGLV5-39A0A0G2JS06 123 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 TRBV30A0A0K0K1B3 111 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 C11orf86A6NJI1 115 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 S100A6P06703 90 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 CKS1BP61024 79 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 SFTA2Q6UW10 78 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 LINC00526Q96FQ7 95 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 LINC00474Q9P2X8 69 aa10.67□□□□□ -0.7
SHKBP1-219ENST00000599575 TMEM170BQ5T4T1 132 aa10.66□□□□□ -0.7
SHKBP1-219ENST00000599575 Q6ZRU5 148 aa10.66□□□□□ -0.7
SHKBP1-219ENST00000599575 SYS1-DBNDD2H3BUS1 97 aa10.65□□□□□ -0.7
SHKBP1-219ENST00000599575 PET117Q6UWS5 81 aa10.65□□□□□ -0.7
SHKBP1-219ENST00000599575 COX7B2Q8TF08 81 aa10.65□□□□□ -0.7
SHKBP1-219ENST00000599575 TOMM7Q9P0U1 55 aa10.65□□□□□ -0.7
SHKBP1-219ENST00000599575 LOC107984640A0A0U1RRK4 108 aa10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 H0Y8G0 127 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 191.1 ms