RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KIR2DL4Q99706 377 aa5.92□□□□□ -1.46
TRIM28-210ENST00000597618 TRBV30A0A0K0K1B3 111 aa5.91□□□□□ -1.46
TRIM28-210ENST00000597618 A8MWL6 223 aa5.91□□□□□ -1.46
TRIM28-210ENST00000597618 RPL28P46779 137 aaKnown RBP5.91□□□□□ -1.46
TRIM28-210ENST00000597618 C9orf129Q5T035 196 aaKnown RBP5.91□□□□□ -1.46
TRIM28-210ENST00000597618 TMEM191AQ9H0A3 160 aa5.91□□□□□ -1.46
TRIM28-210ENST00000597618 IGLV7-46A0A075B6I9 117 aa5.9□□□□□ -1.46
TRIM28-210ENST00000597618 PPP1R17O96001 155 aa5.9□□□□□ -1.46
TRIM28-210ENST00000597618 RAB4AP20338 218 aa5.9□□□□□ -1.46
TRIM28-210ENST00000597618 LINC01547P58512 204 aaPredicted RBP5.9□□□□□ -1.46
TRIM28-210ENST00000597618 SUMO2P61956 95 aaKnown RBP5.9□□□□□ -1.46
TRIM28-210ENST00000597618 OCC1Q8TAD7 63 aa5.9□□□□□ -1.46
TRIM28-210ENST00000597618 CTDSP1Q9GZU7 261 aa5.9□□□□□ -1.46
TRIM28-210ENST00000597618 SMLR1H3BR10 107 aa5.89□□□□□ -1.47
TRIM28-210ENST00000597618 GATCO43716 136 aaKnown RBP5.89□□□□□ -1.47
TRIM28-210ENST00000597618 RGS21Q2M5E4 152 aa5.89□□□□□ -1.47
TRIM28-210ENST00000597618 LBHQ53QV2 105 aaPredicted RBP5.89□□□□□ -1.47
TRIM28-210ENST00000597618 CT83Q5H943 113 aa5.89□□□□□ -1.47
TRIM28-210ENST00000597618 LINC00173Q6ZV60 143 aa5.89□□□□□ -1.47
TRIM28-210ENST00000597618 AMN1Q8IY45 258 aa5.89□□□□□ -1.47
TRIM28-210ENST00000597618 PACRGQ96M98 296 aaPredicted RBP5.89□□□□□ -1.47
TRIM28-210ENST00000597618 TGIF2-C20orf24A0A0A6YYL0 155 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 A0A1B0GUT8 65 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 IFITM10A6NMD0 228 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 PPP1R2P9O14990 202 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 BCE1O60756 84 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 TAGLN2P37802 199 aaKnown RBP5.88□□□□□ -1.47
TRIM28-210ENST00000597618 KIAA0087Q14695 138 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 FAM231DQ6ZW35 169 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 LINC00304Q8N9R0 145 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 SPANXA1Q9NS26 97 aa5.88□□□□□ -1.47
TRIM28-210ENST00000597618 HMSDA8MTL9 139 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 SMKR1H3BMG3 65 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 TCAPO15273 167 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 HBBP68871 147 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 NRACQ8N912 160 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 C22orf24Q9Y442 160 aa5.87□□□□□ -1.47
TRIM28-210ENST00000597618 HIGD1CA8MV81 97 aa5.86□□□□□ -1.47
TRIM28-210ENST00000597618 RPL39P62891 51 aaKnown RBP5.86□□□□□ -1.47
TRIM28-210ENST00000597618 CTAG1AP78358 180 aa5.86□□□□□ -1.47
TRIM28-210ENST00000597618 MRPS36P82909 103 aaKnown RBP5.86□□□□□ -1.47
TRIM28-210ENST00000597618 KRTAP13-2Q52LG2 175 aa5.86□□□□□ -1.47
TRIM28-210ENST00000597618 C2orf82Q6UX34 121 aa5.86□□□□□ -1.47
TRIM28-210ENST00000597618 FAM104AQ969W3 186 aa5.86□□□□□ -1.47
TRIM28-210ENST00000597618 FAM229BQ4G0N7 80 aa5.85□□□□□ -1.47
TRIM28-210ENST00000597618 PPDPFQ9H3Y8 114 aa5.85□□□□□ -1.47
TRIM28-210ENST00000597618 ANAPC11Q9NYG5 84 aa5.85□□□□□ -1.47
TRIM28-210ENST00000597618 TP73-AS1Q9UF72 201 aa5.85□□□□□ -1.47
TRIM28-210ENST00000597618 ZNF727A8MUV8 499 aa5.84□□□□□ -1.47
TRIM28-210ENST00000597618 SRSF3P84103 164 aaKnown RBP5.84□□□□□ -1.47
TRIM28-210ENST00000597618 LINC00242Q5T6M2 205 aa5.84□□□□□ -1.47
TRIM28-210ENST00000597618 MRPL55Q7Z7F7 128 aaKnown RBP5.84□□□□□ -1.47
TRIM28-210ENST00000597618 C20orf78Q9BR46 151 aa5.84□□□□□ -1.47
TRIM28-210ENST00000597618 RPL32P62910 135 aaKnown RBP5.83□□□□□ -1.48
TRIM28-210ENST00000597618 LINC00469Q8N7U9 141 aa5.83□□□□□ -1.48
TRIM28-210ENST00000597618 XAGE1AQ9HD64 81 aa5.83□□□□□ -1.48
TRIM28-210ENST00000597618 IGKV2D-26A0A0A0MRZ7 120 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 TMEM250H0YL14 139 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 PRSS2P07478 247 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 CKS1BP61024 79 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 RIGQ13278 110 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 ASB16-AS1Q495Z4 193 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 LINC01561Q8N1V8 128 aa5.82□□□□□ -1.48
TRIM28-210ENST00000597618 TRBV24-1A0A075B6N3 115 aa5.81□□□□□ -1.48
TRIM28-210ENST00000597618 LINC00862A6NCI5 91 aa5.81□□□□□ -1.48
TRIM28-210ENST00000597618 LINC00337Q8N6G1 96 aa5.81□□□□□ -1.48
TRIM28-210ENST00000597618 IFI27P40305 119 aaPredicted RBP5.8□□□□□ -1.48
TRIM28-210ENST00000597618 UBE2AP49459 152 aa5.8□□□□□ -1.48
TRIM28-210ENST00000597618 MRPL51Q4U2R6 128 aaKnown RBP5.8□□□□□ -1.48
TRIM28-210ENST00000597618 FAM104BQ5XKR9 115 aa5.8□□□□□ -1.48
TRIM28-210ENST00000597618 FP248Q71RG6 208 aaPredicted RBP5.8□□□□□ -1.48
TRIM28-210ENST00000597618 KRTAP13-1Q8IUC0 172 aa5.8□□□□□ -1.48
TRIM28-210ENST00000597618 SMIM2Q9BVW6 85 aa5.8□□□□□ -1.48
TRIM28-210ENST00000597618 RPL37AP8A6NKH3 93 aa5.79□□□□□ -1.48
TRIM28-210ENST00000597618 CKS2P33552 79 aa5.79□□□□□ -1.48
TRIM28-210ENST00000597618 LINC00167Q96N53 147 aa5.79□□□□□ -1.48
TRIM28-210ENST00000597618 OSTCQ9NRP0 149 aa5.79□□□□□ -1.48
TRIM28-210ENST00000597618 IGLV4-3A0A075B6K6 122 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 TNFRSF6BO95407 300 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 CEBPGP53567 150 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 SEC61BP60468 96 aaKnown RBP5.78□□□□□ -1.48
TRIM28-210ENST00000597618 C6orf226Q5I0X4 101 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 Q6ZN92 141 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 LINC01551Q86U37 167 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 Q8IZM0 81 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 TMEM141Q96I45 108 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 C2orf88Q9BSF0 95 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 TOMM7Q9P0U1 55 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 PYGO1Q9Y3Y4 419 aa5.78□□□□□ -1.48
TRIM28-210ENST00000597618 KRTAP13-3Q3SY46 172 aa5.77□□□□□ -1.49
TRIM28-210ENST00000597618 SPAG11AQ6PDA7 123 aa5.77□□□□□ -1.49
TRIM28-210ENST00000597618 TEX43Q6ZNM6 134 aa5.77□□□□□ -1.49
TRIM28-210ENST00000597618 NAT8BQ9UHF3 227 aa5.77□□□□□ -1.49
TRIM28-210ENST00000597618 GAGE10A6NGK3 116 aa5.76□□□□□ -1.49
TRIM28-210ENST00000597618 F8VRH5 84 aa5.76□□□□□ -1.49
TRIM28-210ENST00000597618 RAB5AP20339 215 aa5.76□□□□□ -1.49
TRIM28-210ENST00000597618 SMIM7Q9BQ49 75 aa5.76□□□□□ -1.49
TRIM28-210ENST00000597618 ALKBH7Q9BT30 221 aaPredicted RBP5.76□□□□□ -1.49
TRIM28-210ENST00000597618 KRTAP4-1Q9BYQ7 146 aa5.76□□□□□ -1.49
TRIM28-210ENST00000597618 V9GYV3 84 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms