RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 LINC00173Q6ZV60 143 aa12.78□□□□□ -0.36
SHKBP1-214ENST00000597396 URB1-AS1Q96HZ7 61 aa12.78□□□□□ -0.36
SHKBP1-214ENST00000597396 AMELXQ99217 191 aa12.78□□□□□ -0.36
SHKBP1-214ENST00000597396 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-214ENST00000597396 APOMO95445 188 aa12.76□□□□□ -0.37
SHKBP1-214ENST00000597396 UBE2D1P51668 147 aa12.76□□□□□ -0.37
SHKBP1-214ENST00000597396 CNBPP62633 177 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-214ENST00000597396 ABCA13Q86UQ4 5058 aa12.76□□□□□ -0.37
SHKBP1-214ENST00000597396 HBDP02042 147 aa12.75□□□□□ -0.37
SHKBP1-214ENST00000597396 HSPG2P98160 4391 aa12.75□□□□□ -0.37
SHKBP1-214ENST00000597396 LINC00242Q5T6M2 205 aa12.75□□□□□ -0.37
SHKBP1-214ENST00000597396 C9orf163Q8N9P6 203 aa12.75□□□□□ -0.37
SHKBP1-214ENST00000597396 IGHV3OR16-9A0A0B4J2B5 98 aa12.74□□□□□ -0.37
SHKBP1-214ENST00000597396 ZNF561-AS1K7EIQ3 104 aa12.74□□□□□ -0.37
SHKBP1-214ENST00000597396 SLPIP03973 132 aa12.73□□□□□ -0.37
SHKBP1-214ENST00000597396 PMCHL1Q16048 86 aa12.73□□□□□ -0.37
SHKBP1-214ENST00000597396 BAGE3Q86Y29 109 aa12.73□□□□□ -0.37
SHKBP1-214ENST00000597396 A0A096LNJ9 63 aa12.72□□□□□ -0.37
SHKBP1-214ENST00000597396 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-214ENST00000597396 COX6A2Q02221 97 aa12.72□□□□□ -0.37
SHKBP1-214ENST00000597396 CHCHD1Q96BP2 118 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-214ENST00000597396 LINC00526Q96FQ7 95 aa12.72□□□□□ -0.37
SHKBP1-214ENST00000597396 SEC11AP67812 179 aa12.71□□□□□ -0.37
SHKBP1-214ENST00000597396 FAM30AQ9NZY2 134 aa12.71□□□□□ -0.37
SHKBP1-214ENST00000597396 IGHV3-64A0A075B6Q5 118 aa12.7□□□□□ -0.38
SHKBP1-214ENST00000597396 XGP55808 180 aa12.7□□□□□ -0.38
SHKBP1-214ENST00000597396 ORAOV1Q8WV07 137 aa12.7□□□□□ -0.38
SHKBP1-214ENST00000597396 IGLV4-69A0A075B6H9 119 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 A0A087WZ39 114 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 SPAG11BQ08648 103 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 PMVKQ15126 192 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 FAM19A3Q7Z5A8 133 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 OR10D4PQ8NGN7 298 aa12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 GEMIN7Q9H840 131 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-214ENST00000597396 APOBP04114 4563 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 HSBP1O75506 76 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 ATP5LO75964 103 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 HERVK_113P63121 156 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 HAMPP81172 84 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 Q6ZSA8 131 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 CARD19Q96LW7 228 aa12.68□□□□□ -0.38
SHKBP1-214ENST00000597396 A0A0J9YXV3 536 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 S100A1P23297 94 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 NDUFA6P56556 154 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 SYCNQ0VAF6 134 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 PDZD11Q5EBL8 140 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 CST9LQ9H4G1 147 aa12.67□□□□□ -0.38
SHKBP1-214ENST00000597396 CAMK2N2Q96S95 79 aa12.66□□□□□ -0.38
SHKBP1-214ENST00000597396 ATP6V1G1O75348 118 aa12.65□□□□□ -0.38
SHKBP1-214ENST00000597396 SDIM1Q6ZPB5 146 aa12.65□□□□□ -0.38
SHKBP1-214ENST00000597396 LINC01561Q8N1V8 128 aa12.65□□□□□ -0.38
SHKBP1-214ENST00000597396 Q8N1X5 172 aa12.65□□□□□ -0.38
SHKBP1-214ENST00000597396 C2orf48Q96LS8 159 aa12.65□□□□□ -0.38
SHKBP1-214ENST00000597396 SERF1AO75920 110 aa12.64□□□□□ -0.39
SHKBP1-214ENST00000597396 DNAH8Q96JB1 4490 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 TINCRA0A1B0GVN0 87 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 Q6ZRU5 148 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 FAM19A2Q8N3H0 131 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 LINC00469Q8N7U9 141 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 PACRGQ96M98 296 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 CDKN2A-AS1Q9UH64 79 aa12.63□□□□□ -0.39
SHKBP1-214ENST00000597396 CHAC1Q9BUX1 264 aa12.62□□□□□ -0.39
SHKBP1-214ENST00000597396 PKIGQ9Y2B9 76 aa12.62□□□□□ -0.39
SHKBP1-214ENST00000597396 F8WDY8 70 aa12.61□□□□□ -0.39
SHKBP1-214ENST00000597396 SCXQ7RTU7 201 aa12.61□□□□□ -0.39
SHKBP1-214ENST00000597396 NDUFA1O15239 70 aa12.6□□□□□ -0.39
SHKBP1-214ENST00000597396 IFI27L1Q96BM0 104 aa12.6□□□□□ -0.39
SHKBP1-214ENST00000597396 TOMM7Q9P0U1 55 aa12.6□□□□□ -0.39
SHKBP1-214ENST00000597396 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-214ENST00000597396 SMR3BP02814 79 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-214ENST00000597396 PRSS2P07478 247 aa12.59□□□□□ -0.39
SHKBP1-214ENST00000597396 LINC00310P59036 64 aa12.59□□□□□ -0.39
SHKBP1-214ENST00000597396 DPH3Q96FX2 82 aa12.59□□□□□ -0.39
SHKBP1-214ENST00000597396 CHTF8P0CG12 524 aa12.58□□□□□ -0.4
SHKBP1-214ENST00000597396 KIAA0087Q14695 138 aa12.58□□□□□ -0.4
SHKBP1-214ENST00000597396 CIRBP-AS1Q8TBR5 109 aa12.58□□□□□ -0.4
SHKBP1-214ENST00000597396 IGLV5-45A0A087WSX0 123 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 IGKV2-24A0A0C4DH68 120 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 PANO1I0J062 215 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BKO60814 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BJP06899 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 IGLC3P0DOY3 106 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BOP23527 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BBP33778 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BDP58876 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BCP62807 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST2H2BEQ16778 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BHQ93079 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BNQ99877 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 HIST1H2BMQ99879 126 aa12.57□□□□□ -0.4
SHKBP1-214ENST00000597396 LOC107984640A0A0U1RRK4 108 aa12.56□□□□□ -0.4
SHKBP1-214ENST00000597396 H3BRM9 83 aa12.56□□□□□ -0.4
SHKBP1-214ENST00000597396 NUPR1O60356 82 aa12.56□□□□□ -0.4
SHKBP1-214ENST00000597396 LEPROTL1O95214 131 aa12.56□□□□□ -0.4
SHKBP1-214ENST00000597396 MRPL35Q9NZE8 188 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-214ENST00000597396 SMIM1B2RUZ4 78 aa12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 CIRBPQ14011 172 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 RNF151Q2KHN1 245 aa12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 C6orf226Q5I0X4 101 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms