RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PLECQ15149 4684 aaKnown RBP10.29□□□□□ -0.76
SS18-215ENST00000580642 TGP01266 2768 aa10.29□□□□□ -0.76
SS18-215ENST00000580642 IGKV3OR2-268A0A0C4DH90 116 aa10.29□□□□□ -0.76
SS18-215ENST00000580642 ATOH7Q8N100 152 aa10.29□□□□□ -0.76
SS18-215ENST00000580642 LINC00469Q8N7U9 141 aa10.29□□□□□ -0.76
SS18-215ENST00000580642 CHCHD10Q8WYQ3 142 aaPredicted RBP10.29□□□□□ -0.76
SS18-215ENST00000580642 A0A087WZ39 114 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 E9PLD3 99 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 COX6A2Q02221 97 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 C1orf43Q9BWL3 253 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 CDKN2A-AS1Q9UH64 79 aa10.28□□□□□ -0.76
SS18-215ENST00000580642 STARD9Q9P2P6 4700 aa10.27□□□□□ -0.76
SS18-215ENST00000580642 CSMD3Q7Z407 3707 aa10.27□□□□□ -0.77
SS18-215ENST00000580642 CLPSL2Q6UWE3 100 aa10.27□□□□□ -0.77
SS18-215ENST00000580642 COX7A2LO14548 114 aa10.26□□□□□ -0.77
SS18-215ENST00000580642 XCL1P47992 114 aa10.26□□□□□ -0.77
SS18-215ENST00000580642 STPG4Q8N801 248 aa10.26□□□□□ -0.77
SS18-215ENST00000580642 IGHV1-58A0A0C4DH39 117 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 IGLV5-39A0A0G2JS06 123 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 NBDYA0A0U1RRE5 68 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 hDV102S1A0JD36 115 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 FOXI1Q12951 378 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 SPATA45Q537H7 98 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 PLEKHB2Q96CS7 222 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 TM2D2Q9BX73 214 aa10.25□□□□□ -0.77
SS18-215ENST00000580642 APOMO95445 188 aa10.24□□□□□ -0.77
SS18-215ENST00000580642 CDPF1Q6NVV7 123 aa10.24□□□□□ -0.77
SS18-215ENST00000580642 KRTAP26-1Q6PEX3 210 aa10.24□□□□□ -0.77
SS18-215ENST00000580642 PAM16Q9Y3D7 125 aa10.24□□□□□ -0.77
SS18-215ENST00000580642 GAGE12HA6NDE8 117 aa10.23□□□□□ -0.77
SS18-215ENST00000580642 SMIM1B2RUZ4 78 aa10.23□□□□□ -0.77
SS18-215ENST00000580642 LEPROTO15243 131 aa10.23□□□□□ -0.77
SS18-215ENST00000580642 SFTA2Q6UW10 78 aa10.23□□□□□ -0.77
SS18-215ENST00000580642 LINC00476Q8WZB0 136 aa10.23□□□□□ -0.77
SS18-215ENST00000580642 VPS13DQ5THJ4 4388 aa10.22□□□□□ -0.77
SS18-215ENST00000580642 IGLV10-54A0A075B6I4 117 aa10.22□□□□□ -0.77
SS18-215ENST00000580642 MAJINQ3KP22 176 aa10.22□□□□□ -0.77
SS18-215ENST00000580642 ANKRD39Q53RE8 183 aa10.22□□□□□ -0.77
SS18-215ENST00000580642 IGKV2D-24A0A075B6R9 120 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 DLEU1O43261 78 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 MALP21145 153 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 NMUP48645 174 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 CFAP161Q6P656 301 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 C5orf38Q86SI9 138 aa10.21□□□□□ -0.77
SS18-215ENST00000580642 IGHV3-64A0A075B6Q5 118 aa10.2□□□□□ -0.78
SS18-215ENST00000580642 J3QQQ9 107 aa10.2□□□□□ -0.78
SS18-215ENST00000580642 SPINK8P0C7L1 97 aa10.2□□□□□ -0.78
SS18-215ENST00000580642 COX8AP10176 69 aa10.2□□□□□ -0.78
SS18-215ENST00000580642 LGALS3P17931 250 aaKnown RBP10.19□□□□□ -0.78
SS18-215ENST00000580642 Q6ZR54 194 aa10.19□□□□□ -0.78
SS18-215ENST00000580642 KRTAP1-5Q9BYS1 174 aa10.19□□□□□ -0.78
SS18-215ENST00000580642 Q9HAA7 133 aa10.19□□□□□ -0.78
SS18-215ENST00000580642 TENM2Q9NT68 2774 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 IGKV2D-26A0A0A0MRZ7 120 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 F8WDY8 70 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 TSTD3H0UI37 97 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 LY6G6CO95867 125 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 Q8IZM0 81 aa10.18□□□□□ -0.78
SS18-215ENST00000580642 CXCL5P42830 114 aa10.17□□□□□ -0.78
SS18-215ENST00000580642 SLC25A34Q6PIV7 304 aa10.17□□□□□ -0.78
SS18-215ENST00000580642 BOD1L2Q8IYS8 172 aa10.17□□□□□ -0.78
SS18-215ENST00000580642 UQCR10Q9UDW1 63 aa10.17□□□□□ -0.78
SS18-215ENST00000580642 DNAH1Q9P2D7 4330 aa10.16□□□□□ -0.78
SS18-215ENST00000580642 PRSS2P07478 247 aa10.16□□□□□ -0.78
SS18-215ENST00000580642 COX7B2Q8TF08 81 aa10.16□□□□□ -0.78
SS18-215ENST00000580642 MYMXA0A1B0GTQ4 84 aa10.15□□□□□ -0.78
SS18-215ENST00000580642 HERV-K104P63124 156 aa10.15□□□□□ -0.78
SS18-215ENST00000580642 ORAOV1Q8WV07 137 aa10.15□□□□□ -0.78
SS18-215ENST00000580642 MIEN1Q9BRT3 115 aa10.15□□□□□ -0.78
SS18-215ENST00000580642 GVQW2A0A096LPI5 108 aaPredicted RBP10.14□□□□□ -0.79
SS18-215ENST00000580642 LINC00587B1AMM8 73 aa10.14□□□□□ -0.79
SS18-215ENST00000580642 NDUFA1O15239 70 aa10.14□□□□□ -0.79
SS18-215ENST00000580642 C6orf226Q5I0X4 101 aa10.14□□□□□ -0.79
SS18-215ENST00000580642 NDUFA12Q9UI09 145 aa10.14□□□□□ -0.79
SS18-215ENST00000580642 ZNF815PA8K554 130 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 TSPEAR-AS2P59090 65 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 KIAA0087Q14695 138 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 PCP2Q8IVA1 136 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 C14orf144Q96I85 54 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 C2orf48Q96LS8 159 aa10.13□□□□□ -0.79
SS18-215ENST00000580642 PSCAO43653 123 aa10.12□□□□□ -0.79
SS18-215ENST00000580642 SPAG11BQ08648 103 aa10.12□□□□□ -0.79
SS18-215ENST00000580642 C14orf177Q52M58 125 aa10.12□□□□□ -0.79
SS18-215ENST00000580642 C6orf223Q8N319 242 aa10.12□□□□□ -0.79
SS18-215ENST00000580642 ZNF625Q96I27 306 aaPredicted RBP10.12□□□□□ -0.79
SS18-215ENST00000580642 ALMS1Q8TCU4 4167 aa10.11□□□□□ -0.79
SS18-215ENST00000580642 ZNF561-AS1K7EIQ3 104 aa10.11□□□□□ -0.79
SS18-215ENST00000580642 CKS1BP61024 79 aa10.11□□□□□ -0.79
SS18-215ENST00000580642 TOMM7Q9P0U1 55 aa10.11□□□□□ -0.79
SS18-215ENST00000580642 HIGD1BQ9P298 99 aa10.11□□□□□ -0.79
SS18-215ENST00000580642 Q6ZRN7 208 aaPredicted RBP10.1□□□□□ -0.79
SS18-215ENST00000580642 MAPKAPK5-AS1Q8N8E1 139 aa10.1□□□□□ -0.79
SS18-215ENST00000580642 C15orf56Q8N910 161 aa10.1□□□□□ -0.79
SS18-215ENST00000580642 NTN5Q8WTR8 489 aaPredicted RBP10.1□□□□□ -0.79
SS18-215ENST00000580642 LCE6AA0A183 80 aa10.09□□□□□ -0.79
SS18-215ENST00000580642 TIMM17BO60830 172 aa10.09□□□□□ -0.79
SS18-215ENST00000580642 C1orf134Q5TEV5 83 aa10.09□□□□□ -0.79
SS18-215ENST00000580642 PRO1933Q9H354 126 aa10.09□□□□□ -0.79
SS18-215ENST00000580642 USP17L23D6RBM5 183 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms