RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TRGV2A0A075B6R0 118 aa16.13■□□□□ 0.17
VPS53-211ENST00000571805 LOC100131303A0A0U1RQF7 123 aa16.13■□□□□ 0.17
VPS53-211ENST00000571805 TMEM243Q9BU79 118 aa16.13■□□□□ 0.17
VPS53-211ENST00000571805 TRBV6-4A0A1B0GX49 114 aa16.12■□□□□ 0.17
VPS53-211ENST00000571805 C2CD3Q4AC94 2353 aa16.12■□□□□ 0.17
VPS53-211ENST00000571805 PLA2G2AP14555 144 aa16.12■□□□□ 0.17
VPS53-211ENST00000571805 H7C423 109 aa16.11■□□□□ 0.17
VPS53-211ENST00000571805 CLEC2BQ92478 149 aa16.11■□□□□ 0.17
VPS53-211ENST00000571805 TMEM262E9PQX1 116 aa16.11■□□□□ 0.17
VPS53-211ENST00000571805 A0A0U1RRA0 63 aa16.1■□□□□ 0.17
VPS53-211ENST00000571805 UBE2L6O14933 153 aa16.1■□□□□ 0.17
VPS53-211ENST00000571805 CIDEAO60543 219 aa16.1■□□□□ 0.17
VPS53-211ENST00000571805 SOSTDC1Q6X4U4 206 aa16.1■□□□□ 0.17
VPS53-211ENST00000571805 LST1O00453 97 aa16.09■□□□□ 0.17
VPS53-211ENST00000571805 MTORP42345 2549 aa16.09■□□□□ 0.17
VPS53-211ENST00000571805 TEX49A0A1B0GTD5 131 aa16.08■□□□□ 0.17
VPS53-211ENST00000571805 PRIMA1Q86XR5 153 aa16.08■□□□□ 0.17
VPS53-211ENST00000571805 C2orf82Q6UX34 121 aa16.07■□□□□ 0.16
VPS53-211ENST00000571805 TRGV4A0A0C4DH28 118 aa16.06■□□□□ 0.16
VPS53-211ENST00000571805 FHL2Q14192 279 aa16.06■□□□□ 0.16
VPS53-211ENST00000571805 H3BT86 120 aa16.05■□□□□ 0.16
VPS53-211ENST00000571805 HERV-K104P63124 156 aa16.05■□□□□ 0.16
VPS53-211ENST00000571805 ITPR2Q14571 2701 aa16.05■□□□□ 0.16
VPS53-211ENST00000571805 MEIG1Q5JSS6 88 aa16.05■□□□□ 0.16
VPS53-211ENST00000571805 COPS9Q8WXC6 57 aa16.05■□□□□ 0.16
VPS53-211ENST00000571805 HILS1P60008 231 aa16.04■□□□□ 0.16
VPS53-211ENST00000571805 UBE2WQ96B02 151 aa16.04■□□□□ 0.16
VPS53-211ENST00000571805 GAGE6Q13070 117 aa16.02■□□□□ 0.16
VPS53-211ENST00000571805 A0A1B0GV72 72 aa16.01■□□□□ 0.15
VPS53-211ENST00000571805 SHISA2Q6UWI4 295 aa16.01■□□□□ 0.15
VPS53-211ENST00000571805 TRBV6-8A0A0A6YYG3 113 aa16.01■□□□□ 0.15
VPS53-211ENST00000571805 CKS1BP61024 79 aa16.01■□□□□ 0.15
VPS53-211ENST00000571805 IGLV4-60A0A075B6I1 120 aa16■□□□□ 0.15
VPS53-211ENST00000571805 PPDPFQ9H3Y8 114 aa16■□□□□ 0.15
VPS53-211ENST00000571805 COX7B2Q8TF08 81 aa15.98■□□□□ 0.15
VPS53-211ENST00000571805 COX7A2LO14548 114 aa15.97■□□□□ 0.15
VPS53-211ENST00000571805 KRTAP10-3P60369 221 aa15.97■□□□□ 0.15
VPS53-211ENST00000571805 CITED1Q99966 193 aa15.97■□□□□ 0.15
VPS53-211ENST00000571805 TRAV8-4A0A0B4J246 113 aa15.96■□□□□ 0.15
VPS53-211ENST00000571805 IGHV3OR16-9A0A0B4J2B5 98 aa15.95■□□□□ 0.14
VPS53-211ENST00000571805 IGKV3OR2-268A0A0C4DH90 116 aa15.95■□□□□ 0.14
VPS53-211ENST00000571805 DEFB121Q5J5C9 76 aa15.95■□□□□ 0.14
VPS53-211ENST00000571805 CHCHD5Q9BSY4 110 aa15.95■□□□□ 0.14
VPS53-211ENST00000571805 KIR2DL5BQ8NHK3 375 aa15.94■□□□□ 0.14
VPS53-211ENST00000571805 LINC00612Q8N6U2 182 aa15.93■□□□□ 0.14
VPS53-211ENST00000571805 DEFB130BP0DP73 79 aa15.93■□□□□ 0.14
VPS53-211ENST00000571805 DEFB130AP0DP74 79 aa15.93■□□□□ 0.14
VPS53-211ENST00000571805 CRLF1O75462 422 aa15.92■□□□□ 0.14
VPS53-211ENST00000571805 TOMM7Q9P0U1 55 aa15.92■□□□□ 0.14
VPS53-211ENST00000571805 MIR7-3HGQ8N6C7 128 aa15.91■□□□□ 0.14
VPS53-211ENST00000571805 LINC00482Q8N8I6 264 aa15.91■□□□□ 0.14
VPS53-211ENST00000571805 UNC79Q9P2D8 2635 aa15.9■□□□□ 0.14
VPS53-211ENST00000571805 SMR3AQ99954 134 aa15.9■□□□□ 0.14
VPS53-211ENST00000571805 A0A087WZ39 114 aa15.9■□□□□ 0.14
VPS53-211ENST00000571805 J3QKU1 62 aa15.88■□□□□ 0.13
VPS53-211ENST00000571805 PF4P02776 101 aa15.88■□□□□ 0.13
VPS53-211ENST00000571805 SNCGO76070 127 aa15.87■□□□□ 0.13
VPS53-211ENST00000571805 X6R8D5 127 aa15.87■□□□□ 0.13
VPS53-211ENST00000571805 LINC00959A0A1B0GUT2 108 aa15.87■□□□□ 0.13
VPS53-211ENST00000571805 HELZ2Q9BYK8 2649 aaKnown RBP15.86■□□□□ 0.13
VPS53-211ENST00000571805 IGKV2-28A0A075B6P5 120 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 IGKV2D-28P01615 120 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 TRACP01848 142 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 GYPEP15421 78 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 TRAV13-2A0A0B4J235 113 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 FAM222AQ5U5X8 452 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 C5orf38Q86SI9 138 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 LINC00337Q8N6G1 96 aa15.86■□□□□ 0.13
VPS53-211ENST00000571805 FAM218AQ96MZ4 157 aa15.85■□□□□ 0.13
VPS53-211ENST00000571805 FAM240AA0A1B0GVK7 77 aa15.85■□□□□ 0.13
VPS53-211ENST00000571805 C15orf53Q8NAA6 179 aa15.85■□□□□ 0.13
VPS53-211ENST00000571805 SND1-IT1Q9HBX3 110 aa15.85■□□□□ 0.13
VPS53-211ENST00000571805 FN1P02751 2386 aaKnown RBP15.84■□□□□ 0.13
VPS53-211ENST00000571805 RPL28P46779 137 aaKnown RBP15.84■□□□□ 0.13
VPS53-211ENST00000571805 LINC00158P58513 81 aa15.84■□□□□ 0.13
VPS53-211ENST00000571805 GCN1Q92616 2671 aaKnown RBP15.83■□□□□ 0.13
VPS53-211ENST00000571805 IBA57-AS1B1ANH7 110 aa15.83■□□□□ 0.12
VPS53-211ENST00000571805 HIVEP2P31629 2446 aa15.83■□□□□ 0.12
VPS53-211ENST00000571805 GAGE2BQ13066 116 aa15.83■□□□□ 0.12
VPS53-211ENST00000571805 GAGE2EQ4V326 116 aa15.83■□□□□ 0.12
VPS53-211ENST00000571805 GAGE2DQ9UEU5 116 aa15.83■□□□□ 0.12
VPS53-211ENST00000571805 CRPP02741 224 aa15.82■□□□□ 0.12
VPS53-211ENST00000571805 CCL18P55774 89 aa15.82■□□□□ 0.12
VPS53-211ENST00000571805 A0A1B0GUV1 79 aa15.81■□□□□ 0.12
VPS53-211ENST00000571805 SMIM9A6NGZ8 99 aa15.81■□□□□ 0.12
VPS53-211ENST00000571805 C22orf24Q9Y442 160 aa15.8■□□□□ 0.12
VPS53-211ENST00000571805 NBEAL2Q6ZNJ1 2754 aa15.8■□□□□ 0.12
VPS53-211ENST00000571805 MRPL23Q16540 153 aaKnown RBP15.8■□□□□ 0.12
VPS53-211ENST00000571805 SPATA3Q8NHX4 192 aa15.8■□□□□ 0.12
VPS53-211ENST00000571805 PRO0255Q9UI72 69 aa15.8■□□□□ 0.12
VPS53-211ENST00000571805 VWFP04275 2813 aa15.8■□□□□ 0.12
VPS53-211ENST00000571805 Q6Q795 121 aa15.79■□□□□ 0.12
VPS53-211ENST00000571805 BAALC-AS2P0C853 105 aa15.79■□□□□ 0.12
VPS53-211ENST00000571805 FASNP49327 2511 aaKnown RBP15.79■□□□□ 0.12
VPS53-211ENST00000571805 PFN2P35080 140 aa15.77■□□□□ 0.12
VPS53-211ENST00000571805 ANAPC13Q9BS18 74 aa15.77■□□□□ 0.11
VPS53-211ENST00000571805 XCL1P47992 114 aa15.76■□□□□ 0.11
VPS53-211ENST00000571805 TTC32Q5I0X7 151 aa15.76■□□□□ 0.11
VPS53-211ENST00000571805 SMIM11BQ8TCY0 68 aa15.76■□□□□ 0.11
VPS53-211ENST00000571805 LY6G6DO95868 133 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms