RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 IGLV4-69A0A075B6H9 119 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 IFITM10A6NMD0 228 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 C1orf196B1AJZ1 125 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 LECT2O14960 151 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 HSBP1O75506 76 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 SLPIP03973 132 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 FUSP35637 526 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS35-211ENST00000569950 XCL1P47992 114 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 SMAGPQ0VAQ4 97 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 CD164L2Q6UWJ8 174 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 TM2D2Q9BX73 214 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 CST9LQ9H4G1 147 aa6.08□□□□□ -1.44
VPS35-211ENST00000569950 LINC01549A6NIU2 74 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 USP17L23D6RBM5 183 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 PRSS1P07477 247 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 G0S2P27469 103 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 TEX43Q6ZNM6 134 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 RMI2Q96E14 147 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 COX11Q9Y6N1 276 aa6.07□□□□□ -1.44
VPS35-211ENST00000569950 IGLV5-45A0A087WSX0 123 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 A0A0J9YXV3 536 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.06□□□□□ -1.44
VPS35-211ENST00000569950 PMVKQ15126 192 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 SPATA12Q7Z6I5 190 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 Q8N814 137 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 VCX2Q9H322 139 aa6.06□□□□□ -1.44
VPS35-211ENST00000569950 NDUFA6P56556 154 aa6.05□□□□□ -1.44
VPS35-211ENST00000569950 SS18Q15532 418 aa6.05□□□□□ -1.44
VPS35-211ENST00000569950 IFI27L1Q96BM0 104 aa6.05□□□□□ -1.44
VPS35-211ENST00000569950 A0A087WZ39 114 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 GVQW2A0A096LPI5 108 aaPredicted RBP6.04□□□□□ -1.44
VPS35-211ENST00000569950 PSCAO43653 123 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 ATP5LO75964 103 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 IGLC3P0DOY3 106 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 KIAA0087Q14695 138 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 ODF1Q14990 250 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 C5orf38Q86SI9 138 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 HIST3H2BBQ8N257 126 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 CDKN2A-AS1Q9UH64 79 aa6.04□□□□□ -1.44
VPS35-211ENST00000569950 KIAA1109Q2LD37 5005 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 TRAV12-1A0A0B4J245 112 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 TINCRA0A1B0GVN0 87 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 C11orf86A6NJI1 115 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 LEPROTL1O95214 131 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 FABP4P15090 132 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 PAPPA-AS1Q5QFB9 102 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 Q6ZN92 141 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 LINC00526Q96FQ7 95 aa6.03□□□□□ -1.44
VPS35-211ENST00000569950 HSPG2P98160 4391 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 IGHV3-64A0A075B6Q5 118 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 C5orf52A6NGY3 159 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 COX7A2LO14548 114 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 ZNF22P17026 224 aaPredicted RBP6.02□□□□□ -1.45
VPS35-211ENST00000569950 PACRGQ96M98 296 aaPredicted RBP6.02□□□□□ -1.45
VPS35-211ENST00000569950 C2orf88Q9BSF0 95 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 MRPL35Q9NZE8 188 aaKnown RBP6.02□□□□□ -1.45
VPS35-211ENST00000569950 RYR1P21817 5038 aa6.02□□□□□ -1.45
VPS35-211ENST00000569950 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.01□□□□□ -1.45
VPS35-211ENST00000569950 SMIM1B2RUZ4 78 aa6.01□□□□□ -1.45
VPS35-211ENST00000569950 CNBPP62633 177 aaKnown RBP6.01□□□□□ -1.45
VPS35-211ENST00000569950 HIGD2BQ4VC39 106 aa6.01□□□□□ -1.45
VPS35-211ENST00000569950 LINC01561Q8N1V8 128 aa6.01□□□□□ -1.45
VPS35-211ENST00000569950 HIST1H2BLQ99880 126 aa6.01□□□□□ -1.45
VPS35-211ENST00000569950 CHAC1Q9BUX1 264 aa6.01□□□□□ -1.45
VPS35-211ENST00000569950 IGHV1-58A0A0C4DH39 117 aa6□□□□□ -1.45
VPS35-211ENST00000569950 IGLV5-39A0A0G2JS06 123 aa6□□□□□ -1.45
VPS35-211ENST00000569950 F8VRH5 84 aa6□□□□□ -1.45
VPS35-211ENST00000569950 C3orf79P0CE67 100 aa6□□□□□ -1.45
VPS35-211ENST00000569950 KRTAP10-1P60331 282 aa6□□□□□ -1.45
VPS35-211ENST00000569950 SNRPEP62304 92 aaKnown RBP6□□□□□ -1.45
VPS35-211ENST00000569950 HERVK_113P63121 156 aa6□□□□□ -1.45
VPS35-211ENST00000569950 LINC01620Q4KN68 170 aa6□□□□□ -1.45
VPS35-211ENST00000569950 CHTOPQ9Y3Y2 248 aaKnown RBP6□□□□□ -1.45
VPS35-211ENST00000569950 SYS1-DBNDD2H3BUS1 97 aa5.99□□□□□ -1.45
VPS35-211ENST00000569950 C10orf25Q5T742 122 aa5.99□□□□□ -1.45
VPS35-211ENST00000569950 LINC01545Q5VT33 79 aa5.99□□□□□ -1.45
VPS35-211ENST00000569950 PMCHL2Q9BQD1 86 aa5.99□□□□□ -1.45
VPS35-211ENST00000569950 HSPB8Q9UJY1 196 aa5.99□□□□□ -1.45
VPS35-211ENST00000569950 hDV102S1A0JD36 115 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 SEC11AP67812 179 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 CDPF1Q6NVV7 123 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 LINC00469Q8N7U9 141 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 C9orf163Q8N9P6 203 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 OR10D4PQ8NGN7 298 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 ORAOV1Q8WV07 137 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 KRTAP17-1Q9BYP8 105 aa5.98□□□□□ -1.45
VPS35-211ENST00000569950 GEMIN7Q9H840 131 aaKnown RBP5.98□□□□□ -1.45
VPS35-211ENST00000569950 HERC2O95714 4834 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 TMEM223A0PJW6 202 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 PANO1I0J062 215 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 SPINK8P0C7L1 97 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 SPAG11BQ08648 103 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 C14orf177Q52M58 125 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 CFAP161Q6P656 301 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 SDIM1Q6ZPB5 146 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 Q6ZRU5 148 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 C2orf48Q96LS8 159 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 FAM30AQ9NZY2 134 aa5.97□□□□□ -1.45
VPS35-211ENST00000569950 IGLV5-52A0A0A0MRZ9 124 aa5.96□□□□□ -1.46
VPS35-211ENST00000569950 H0Y8G0 127 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms