RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 Q9HAA7 133 aa9.66□□□□□ -0.86
CLK3-206ENST00000562078 VSIG2Q96IQ7 327 aa9.65□□□□□ -0.86
CLK3-206ENST00000562078 PKIGQ9Y2B9 76 aa9.65□□□□□ -0.86
CLK3-206ENST00000562078 INAFM2P0DMQ5 153 aa9.65□□□□□ -0.86
CLK3-206ENST00000562078 OTOGQ6ZRI0 2925 aa9.65□□□□□ -0.87
CLK3-206ENST00000562078 TRBV6-5A0A0K0K1A5 114 aa9.64□□□□□ -0.87
CLK3-206ENST00000562078 A0A0U1RRA0 63 aa9.64□□□□□ -0.87
CLK3-206ENST00000562078 TINCRA0A1B0GVN0 87 aa9.64□□□□□ -0.87
CLK3-206ENST00000562078 FAM104AQ969W3 186 aa9.64□□□□□ -0.87
CLK3-206ENST00000562078 CD28P10747 220 aa9.64□□□□□ -0.87
CLK3-206ENST00000562078 MRPS36P82909 103 aaKnown RBP9.64□□□□□ -0.87
CLK3-206ENST00000562078 C9orf129Q5T035 196 aaKnown RBP9.64□□□□□ -0.87
CLK3-206ENST00000562078 M0QY20 66 aa9.63□□□□□ -0.87
CLK3-206ENST00000562078 SMR3AQ99954 134 aa9.63□□□□□ -0.87
CLK3-206ENST00000562078 ZNF702PQ9H963 129 aa9.63□□□□□ -0.87
CLK3-206ENST00000562078 LINC00846Q9NV44 126 aa9.63□□□□□ -0.87
CLK3-206ENST00000562078 ANK3Q12955 4377 aaKnown RBP9.63□□□□□ -0.87
CLK3-206ENST00000562078 SORL1Q92673 2214 aa9.63□□□□□ -0.87
CLK3-206ENST00000562078 DNAL4O96015 105 aa9.62□□□□□ -0.87
CLK3-206ENST00000562078 HOXD3P31249 432 aaPredicted RBP9.62□□□□□ -0.87
CLK3-206ENST00000562078 C14orf132Q9NPU4 83 aa9.62□□□□□ -0.87
CLK3-206ENST00000562078 LINC00308Q8TCZ7 52 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 V9GYY9 64 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 TMEM89A2RUT3 159 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 K7EMT4 169 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 FAM222AQ5U5X8 452 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 Q6JHZ5 121 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 PRIMA1Q86XR5 153 aa9.61□□□□□ -0.87
CLK3-206ENST00000562078 ZNF625Q96I27 306 aaPredicted RBP9.61□□□□□ -0.87
CLK3-206ENST00000562078 NF1P21359 2839 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 HILS1P60008 231 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 FLNBO75369 2602 aaKnown RBP9.59□□□□□ -0.87
CLK3-206ENST00000562078 DNAJC9-AS1A6NH13 148 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 TIMM17BO60830 172 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 LY6G6DO95868 133 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 SOSTDC1Q6X4U4 206 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 TMEM86BQ8N661 226 aa9.59□□□□□ -0.87
CLK3-206ENST00000562078 TMEM243Q9BU79 118 aa9.58□□□□□ -0.88
CLK3-206ENST00000562078 MTORP42345 2549 aa9.58□□□□□ -0.88
CLK3-206ENST00000562078 C9orf85Q96MD7 179 aa9.58□□□□□ -0.88
CLK3-206ENST00000562078 CIRBPQ14011 172 aaKnown RBP9.57□□□□□ -0.88
CLK3-206ENST00000562078 UBE2D4Q9Y2X8 147 aa9.57□□□□□ -0.88
CLK3-206ENST00000562078 HIVEP2P31629 2446 aa9.57□□□□□ -0.88
CLK3-206ENST00000562078 ZNF415Q09FC8 603 aa9.57□□□□□ -0.88
CLK3-206ENST00000562078 APRG1Q8IVJ8 170 aa9.57□□□□□ -0.88
CLK3-206ENST00000562078 CUBNO60494 3623 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 FAM236DA0A1B0GTK5 79 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 FAM236CP0DP71 79 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 WFDC9Q8NEX5 89 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 NDUFC2O95298 119 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 GHRHP01286 108 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 DEFB136Q30KP8 78 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 C20orf197Q8N268 126 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 UBE2E2Q96LR5 201 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 ESM1Q9NQ30 184 aa9.56□□□□□ -0.88
CLK3-206ENST00000562078 WNK1Q9H4A3 2382 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 NDUFA1O15239 70 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 CDKN2A-AS1Q9UH64 79 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 TRAV23DV6A0A075B6W5 121 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 RPL28P46779 137 aaKnown RBP9.55□□□□□ -0.88
CLK3-206ENST00000562078 C18orf65Q6ZTR6 163 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 Q9H8V8 135 aa9.55□□□□□ -0.88
CLK3-206ENST00000562078 NDUFC2-KCTD14E9PQ53 114 aa9.54□□□□□ -0.88
CLK3-206ENST00000562078 EPM2AB3EWF7 344 aa9.54□□□□□ -0.88
CLK3-206ENST00000562078 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.54□□□□□ -0.88
CLK3-206ENST00000562078 SETD2Q9BYW2 2564 aaPredicted RBP9.53□□□□□ -0.88
CLK3-206ENST00000562078 C16orf95Q9H693 158 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 BAHCC1Q9P281 2608 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 TRAV12-2A0A075B6T6 113 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 A0A087WYN8 130 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 KLLNB2CW77 178 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 SLURP1P55000 103 aa9.53□□□□□ -0.88
CLK3-206ENST00000562078 HIVEP1P15822 2718 aa9.52□□□□□ -0.88
CLK3-206ENST00000562078 K7EQG2 157 aa9.52□□□□□ -0.89
CLK3-206ENST00000562078 IGKV3-20P01619 116 aa9.52□□□□□ -0.89
CLK3-206ENST00000562078 KHDC1LQ5JSQ8 128 aa9.52□□□□□ -0.89
CLK3-206ENST00000562078 IGHV3-73A0A0B4J1V6 119 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 IGHV3-16A0A0C4DH30 117 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1BA6NDE4 496 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1EA6NEQ0 496 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 INAFM1C9JVW0 142 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 NCR3O14931 201 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1DP0C7P1 496 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1A1P0DJD3 496 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1CP0DJD4 496 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 SNRPD3P62318 126 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 RBMY1FQ15415 496 aaKnown RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 HIST2H2BDQ6DRA6 164 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 SERP1Q9Y6X1 66 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 XCL1P47992 114 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 PIK3CD-AS1Q5SR53 167 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 FP248Q71RG6 208 aaPredicted RBP9.51□□□□□ -0.89
CLK3-206ENST00000562078 XCL2Q9UBD3 114 aa9.51□□□□□ -0.89
CLK3-206ENST00000562078 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.5□□□□□ -0.89
CLK3-206ENST00000562078 IGKV2-29A2NJV5 120 aaPredicted RBP9.5□□□□□ -0.89
CLK3-206ENST00000562078 A0A0U1RQV1 116 aa9.5□□□□□ -0.89
CLK3-206ENST00000562078 RNASE1P07998 156 aaKnown RBP9.5□□□□□ -0.89
CLK3-206ENST00000562078 SETXQ7Z333 2677 aaKnown RBP9.5□□□□□ -0.89
CLK3-206ENST00000562078 NSD1Q96L73 2696 aaPredicted RBP9.5□□□□□ -0.89
CLK3-206ENST00000562078 PROK1P58294 105 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms