RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TRGC2P03986 189 aa8.44□□□□□ -1.06
NEDD8-208ENST00000560427 Q6ZSA8 131 aa8.44□□□□□ -1.06
NEDD8-208ENST00000560427 LINC00173Q6ZV60 143 aa8.44□□□□□ -1.06
NEDD8-208ENST00000560427 CHCHD1Q96BP2 118 aaKnown RBP8.44□□□□□ -1.06
NEDD8-208ENST00000560427 URB1-AS1Q96HZ7 61 aa8.44□□□□□ -1.06
NEDD8-208ENST00000560427 HIGD2BQ4VC39 106 aa8.43□□□□□ -1.06
NEDD8-208ENST00000560427 LINC00242Q5T6M2 205 aa8.43□□□□□ -1.06
NEDD8-208ENST00000560427 LINC01561Q8N1V8 128 aa8.43□□□□□ -1.06
NEDD8-208ENST00000560427 OR10D4PQ8NGN7 298 aa8.43□□□□□ -1.06
NEDD8-208ENST00000560427 PKIGQ9Y2B9 76 aa8.43□□□□□ -1.06
NEDD8-208ENST00000560427 A0A087WZ39 114 aa8.42□□□□□ -1.06
NEDD8-208ENST00000560427 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.42□□□□□ -1.06
NEDD8-208ENST00000560427 ZNF561-AS1K7EIQ3 104 aa8.42□□□□□ -1.06
NEDD8-208ENST00000560427 C5orf38Q86SI9 138 aa8.42□□□□□ -1.06
NEDD8-208ENST00000560427 RYR1P21817 5038 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 IGHV3-64A0A075B6Q5 118 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 A0A096LNJ9 63 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 F8WDY8 70 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 HERVK_113P63121 156 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 HERC2O95714 4834 aa8.41□□□□□ -1.06
NEDD8-208ENST00000560427 ATP5LO75964 103 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 SLPIP03973 132 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 S100A1P23297 94 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 PMVKQ15126 192 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 LINC01620Q4KN68 170 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 BAGE3Q86Y29 109 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 C2orf48Q96LS8 159 aa8.4□□□□□ -1.06
NEDD8-208ENST00000560427 APOBP04114 4563 aaKnown RBP8.39□□□□□ -1.07
NEDD8-208ENST00000560427 SCO1O75880 301 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 XGP55808 180 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 SPAG11BQ08648 103 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 PDZD11Q5EBL8 140 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 CARD19Q96LW7 228 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 CST9LQ9H4G1 147 aa8.39□□□□□ -1.07
NEDD8-208ENST00000560427 GEMIN7Q9H840 131 aaKnown RBP8.39□□□□□ -1.07
NEDD8-208ENST00000560427 IGLV4-69A0A075B6H9 119 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 TINCRA0A1B0GVN0 87 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 HSBP1O75506 76 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 SYCNQ0VAF6 134 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 ZC2HC1BQ5TFG8 222 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 SDIM1Q6ZPB5 146 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 ORAOV1Q8WV07 137 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 FAM30AQ9NZY2 134 aa8.38□□□□□ -1.07
NEDD8-208ENST00000560427 COX6A2Q02221 97 aa8.37□□□□□ -1.07
NEDD8-208ENST00000560427 PMCHL1Q16048 86 aa8.37□□□□□ -1.07
NEDD8-208ENST00000560427 CHAC1Q9BUX1 264 aa8.37□□□□□ -1.07
NEDD8-208ENST00000560427 IGLV5-45A0A087WSX0 123 aa8.36□□□□□ -1.07
NEDD8-208ENST00000560427 CAMK2N2Q96S95 79 aa8.36□□□□□ -1.07
NEDD8-208ENST00000560427 A0A0J9YXV3 536 aa8.35□□□□□ -1.07
NEDD8-208ENST00000560427 CIRBPQ14011 172 aaKnown RBP8.35□□□□□ -1.07
NEDD8-208ENST00000560427 Q8N1X5 172 aa8.35□□□□□ -1.07
NEDD8-208ENST00000560427 PACRGQ96M98 296 aaPredicted RBP8.35□□□□□ -1.07
NEDD8-208ENST00000560427 HSPG2P98160 4391 aa8.35□□□□□ -1.07
NEDD8-208ENST00000560427 NDUFA1O15239 70 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 SERF1AO75920 110 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 RNF151Q2KHN1 245 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 Q6ZRU5 148 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 SCXQ7RTU7 201 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 LINC00469Q8N7U9 141 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 LINC00526Q96FQ7 95 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 MRPL35Q9NZE8 188 aaKnown RBP8.34□□□□□ -1.07
NEDD8-208ENST00000560427 LINC00474Q9P2X8 69 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 CDKN2A-AS1Q9UH64 79 aa8.34□□□□□ -1.07
NEDD8-208ENST00000560427 DNAH8Q96JB1 4490 aa8.33□□□□□ -1.08
NEDD8-208ENST00000560427 TRAV12-1A0A0B4J245 112 aa8.33□□□□□ -1.08
NEDD8-208ENST00000560427 ATP6V1G1O75348 118 aa8.33□□□□□ -1.08
NEDD8-208ENST00000560427 IGLC3P0DOY3 106 aa8.33□□□□□ -1.08
NEDD8-208ENST00000560427 KIAA0087Q14695 138 aa8.33□□□□□ -1.08
NEDD8-208ENST00000560427 H3BRM9 83 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 PRSS2P07478 247 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 NDUFA6P56556 154 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 LINC00310P59036 64 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 Q8IZM0 81 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 CIRBP-AS1Q8TBR5 109 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 SPACA4Q8TDM5 124 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 IFI27L1Q96BM0 104 aa8.32□□□□□ -1.08
NEDD8-208ENST00000560427 LOC107984640A0A0U1RRK4 108 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 SMIM1B2RUZ4 78 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BKO60814 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BJP06899 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BOP23527 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BBP33778 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 CXCL5P42830 114 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BDP58876 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BCP62807 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST2H2BEQ16778 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BHQ93079 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BNQ99877 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 HIST1H2BMQ99879 126 aa8.31□□□□□ -1.08
NEDD8-208ENST00000560427 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.31□□□□□ -1.08
NEDD8-208ENST00000560427 TRBV30A0A0K0K1B3 111 aa8.3□□□□□ -1.08
NEDD8-208ENST00000560427 LEPROTL1O95214 131 aa8.3□□□□□ -1.08
NEDD8-208ENST00000560427 HAMPP81172 84 aa8.3□□□□□ -1.08
NEDD8-208ENST00000560427 FAM19A2Q8N3H0 131 aa8.3□□□□□ -1.08
NEDD8-208ENST00000560427 HSPB8Q9UJY1 196 aa8.3□□□□□ -1.08
NEDD8-208ENST00000560427 TLX1NBP0CAT3 122 aa8.29□□□□□ -1.08
NEDD8-208ENST00000560427 CKS1BP61024 79 aa8.29□□□□□ -1.08
NEDD8-208ENST00000560427 C6orf226Q5I0X4 101 aa8.29□□□□□ -1.08
NEDD8-208ENST00000560427 TOMM7Q9P0U1 55 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms