RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TSLPQ969D9 159 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 SPANXA1Q9NS26 97 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 NWD2Q9ULI1 1742 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 DISP2A7MBM2 1401 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 PPIP5K1Q6PFW1 1433 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 LRRK2Q5S007 2527 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 CUBNO60494 3623 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 SBF2Q86WG5 1849 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 PKD1P98161 4303 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 CCDC168Q8NDH2 2452 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 SSSCA1O60232 199 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 MGPP08493 103 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 GUCA1AP43080 201 aaPredicted RBP-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 DEFA5Q01523 94 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 MORN2Q502X0 79 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 AKAP14Q86UN6 197 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 Q8N8P6 123 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 TMEM263Q8WUH6 116 aaKnown RBP-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 MGST2Q99735 147 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 GSKIPQ9P0R6 139 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 CDK5RAP2Q96SN8 1893 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 ZNF518AQ6AHZ1 1483 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 PXDNQ92626 1479 aa-1.5□□□□□ -2.65
VPS13C-205ENST00000558088 TRBV7-3A0A075B6L6 115 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 HMGN4O00479 90 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 HIST1H1DP16402 221 aaKnown RBP-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 ALX1Q15699 326 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 OVOS2A0A0J9YW53 1432 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 OVOS2Q6IE36 1432 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 SETBP1Q9Y6X0 1596 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 DNHD1Q96M86 4753 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 KIF21AQ7Z4S6 1674 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 PBRM1Q86U86 1689 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 MGAM2Q2M2H8 2515 aa-1.51□□□□□ -2.65
VPS13C-205ENST00000558088 B2MP61769 119 aa-1.52□□□□□ -2.65
VPS13C-205ENST00000558088 MRPL54Q6P161 138 aaKnown RBP-1.52□□□□□ -2.65
VPS13C-205ENST00000558088 TSTD1Q8NFU3 115 aa-1.52□□□□□ -2.65
VPS13C-205ENST00000558088 TPT1P8Q9HAU6 139 aa-1.52□□□□□ -2.65
VPS13C-205ENST00000558088 CRIPTQ9P021 101 aa-1.52□□□□□ -2.65
VPS13C-205ENST00000558088 LOC285095A0A1B0GVY8 99 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 GNG14A0A1W2PPG7 69 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 H3BNG1 76 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 ARAP2Q8WZ64 1704 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 LINC01600Q96MT4 127 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 SELENOSQ9BQE4 189 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 ANKRD30AQ9BXX3 1397 aa-1.53□□□□□ -2.65
VPS13C-205ENST00000558088 IGLC1P0CG04 106 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 CKS1BP61024 79 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 UBE2D3P61077 147 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 UBE2D2P62837 147 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 HEPN1Q6WQI6 88 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 PDCD10Q9BUL8 212 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 DNAH9Q9NYC9 4486 aa-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 ANK3Q12955 4377 aaKnown RBP-1.54□□□□□ -2.66
VPS13C-205ENST00000558088 MYOM3Q5VTT5 1437 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 LAMA3Q16787 3333 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 MYH6P13533 1939 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 I3L3M4 83 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 SCGB1A1P11684 91 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 COPZ1P61923 177 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 TMEM191AQ9H0A3 160 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 NXT2Q9NPJ8 142 aaKnown RBP-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 FMN2Q9NZ56 1722 aa-1.55□□□□□ -2.66
VPS13C-205ENST00000558088 VPS13BQ7Z7G8 4022 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 CHKB-CPT1BH3BT56 60 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 TSPAN19P0C672 248 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 SMCO1Q147U7 214 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 LZICQ8WZA0 190 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 ARL2-SNX15V9GYD0 113 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 TULP4Q9NRJ4 1543 aa-1.56□□□□□ -2.66
VPS13C-205ENST00000558088 KIAA0556O60303 1618 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 MT1AP04731 61 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 NBEAP1P0C6P0 100 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 SEC11AP67812 179 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 PRO1933Q9H354 126 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 MTORP42345 2549 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 ADGRB1O14514 1584 aa-1.57□□□□□ -2.66
VPS13C-205ENST00000558088 TRAV30A0A087WSZ9 112 aa-1.58□□□□□ -2.66
VPS13C-205ENST00000558088 WHAMMP3Q1A5X7 153 aa-1.58□□□□□ -2.66
VPS13C-205ENST00000558088 LCN9Q8WX39 176 aa-1.58□□□□□ -2.66
VPS13C-205ENST00000558088 TCEAL4Q96EI5 215 aa-1.58□□□□□ -2.66
VPS13C-205ENST00000558088 CELSR3Q9NYQ7 3312 aa-1.59□□□□□ -2.66
VPS13C-205ENST00000558088 C12orf73Q69YU5 71 aa-1.59□□□□□ -2.66
VPS13C-205ENST00000558088 COPS9Q8WXC6 57 aa-1.59□□□□□ -2.66
VPS13C-205ENST00000558088 DPH3Q96FX2 82 aa-1.59□□□□□ -2.66
VPS13C-205ENST00000558088 SLIT1O75093 1534 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 ITPR1Q14643 2758 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 DOCK2Q92608 1830 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 LOC100130705A0A1B0GUX0 176 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 FAM223AQ8IWN6 122 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 FAM167A-AS1Q96KT0 104 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 CCDC167Q9P0B6 97 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 UQCR10Q9UDW1 63 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 RAPGEF6Q8TEU7 1601 aa-1.6□□□□□ -2.67
VPS13C-205ENST00000558088 SPEF2Q9C093 1822 aa-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 A0A1B0GWA3 101 aa-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 RPS25P62851 125 aaKnown RBP-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 SPRR4Q96PI1 79 aa-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 PRG4Q92954 1404 aaPredicted RBP-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 GCN1Q92616 2671 aaKnown RBP-1.61□□□□□ -2.67
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms