RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 B5MCH6 92 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 C3orf56Q8N813 242 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 UBE2WQ96B02 151 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 A4D1N5 150 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 KRTAP24-1Q3LI83 254 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 RPL39P62891 51 aaKnown RBP9.03□□□□□ -0.96
SHMT2-229ENST00000557348 Q6ZSN1 163 aa9.03□□□□□ -0.96
SHMT2-229ENST00000557348 SS18L2Q9UHA2 77 aa9.03□□□□□ -0.96
SHMT2-229ENST00000557348 A0A0J9YXY3 114 aa9.02□□□□□ -0.97
SHMT2-229ENST00000557348 LYRM9A8MSI8 78 aa9.02□□□□□ -0.97
SHMT2-229ENST00000557348 TIMM17BO60830 172 aa9.02□□□□□ -0.97
SHMT2-229ENST00000557348 LINC00612Q8N6U2 182 aa9.02□□□□□ -0.97
SHMT2-229ENST00000557348 TIMM21Q9BVV7 248 aa9.02□□□□□ -0.97
SHMT2-229ENST00000557348 ATRQ13535 2644 aa9.01□□□□□ -0.97
SHMT2-229ENST00000557348 NTN5Q8WTR8 489 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-229ENST00000557348 COPS9Q8WXC6 57 aa9.01□□□□□ -0.97
SHMT2-229ENST00000557348 PPDPFQ9H3Y8 114 aa9.01□□□□□ -0.97
SHMT2-229ENST00000557348 TRGV4A0A0C4DH28 118 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 ZNRF2Q8NHG8 242 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 MIFP14174 115 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 C15orf53Q8NAA6 179 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 TMEM101Q96IK0 257 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 X6R8D5 127 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 CUBNO60494 3623 aa9□□□□□ -0.97
SHMT2-229ENST00000557348 IGLV4-3A0A075B6K6 122 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 H7C423 109 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 MRPS36P82909 103 aaKnown RBP8.99□□□□□ -0.97
SHMT2-229ENST00000557348 C2orf82Q6UX34 121 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 SPATA3Q8NHX4 192 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 MDFIQ99750 246 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 CHCHD7Q9BUK0 85 aa8.99□□□□□ -0.97
SHMT2-229ENST00000557348 COL6A5A8TX70 2615 aa8.98□□□□□ -0.97
SHMT2-229ENST00000557348 A8MZ25 164 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 ZNF22P17026 224 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-229ENST00000557348 TSPEAR-AS2P59090 65 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 Q1RN00 199 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 MUSTN1Q8IVN3 82 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 UBE2D4Q9Y2X8 147 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 CSDC2Q9Y534 153 aaKnown RBP8.97□□□□□ -0.97
SHMT2-229ENST00000557348 IGHV4-30-4P0DP06 118 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 EGFEM1PQ0D2K5 195 aa8.97□□□□□ -0.97
SHMT2-229ENST00000557348 NACAE9PAV3 2078 aa8.96□□□□□ -0.97
SHMT2-229ENST00000557348 LST1O00453 97 aa8.96□□□□□ -0.98
SHMT2-229ENST00000557348 FHL2Q14192 279 aa8.96□□□□□ -0.98
SHMT2-229ENST00000557348 DEFB135Q30KP9 77 aa8.96□□□□□ -0.98
SHMT2-229ENST00000557348 DGAT2L7PQ6IED9 249 aa8.96□□□□□ -0.98
SHMT2-229ENST00000557348 ICOSQ9Y6W8 199 aa8.96□□□□□ -0.98
SHMT2-229ENST00000557348 FBN1P35555 2871 aaKnown RBP8.96□□□□□ -0.98
SHMT2-229ENST00000557348 CXCL5P42830 114 aa8.95□□□□□ -0.98
SHMT2-229ENST00000557348 EMP1P54849 157 aa8.95□□□□□ -0.98
SHMT2-229ENST00000557348 SFTA2Q6UW10 78 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 DEFB104AQ8WTQ1 72 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 IGHV3-38A0A0C4DH36 116 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 IGHV1-58A0A0C4DH39 117 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 TINCRA0A1B0GVN0 87 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 CCDC179H3BU77 68 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 UBE2L6O14933 153 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 TRIAP1O43715 76 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 DEFB130BP0DP73 79 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 DEFB130AP0DP74 79 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 MIAQ16674 131 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 MEIG1Q5JSS6 88 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 TMEM243Q9BU79 118 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 Q9UF83 564 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 PRO0255Q9UI72 69 aa8.94□□□□□ -0.98
SHMT2-229ENST00000557348 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.93□□□□□ -0.98
SHMT2-229ENST00000557348 IGKV2-29A2NJV5 120 aaPredicted RBP8.93□□□□□ -0.98
SHMT2-229ENST00000557348 LINC00694P0DN24 101 aa8.93□□□□□ -0.98
SHMT2-229ENST00000557348 FAM222AQ5U5X8 452 aa8.93□□□□□ -0.98
SHMT2-229ENST00000557348 LINC00643Q86TS7 51 aa8.93□□□□□ -0.98
SHMT2-229ENST00000557348 IGHV4-28A0A0C4DH34 117 aa8.92□□□□□ -0.98
SHMT2-229ENST00000557348 TEX49A0A1B0GTD5 131 aa8.92□□□□□ -0.98
SHMT2-229ENST00000557348 SPART-AS1P0CW21 52 aa8.92□□□□□ -0.98
SHMT2-229ENST00000557348 DNHD1Q96M86 4753 aa8.92□□□□□ -0.98
SHMT2-229ENST00000557348 UQCRQO14949 82 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 DAD1P61803 113 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 HERV-K104P63124 156 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 SDIM1Q6ZPB5 146 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 Q8NAQ8 132 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 LITAFQ99732 161 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 OPRPNQ99935 248 aaPredicted RBP8.91□□□□□ -0.98
SHMT2-229ENST00000557348 A0A1B0GX51 115 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 EIF4EBP3O60516 100 aaPredicted RBP8.91□□□□□ -0.98
SHMT2-229ENST00000557348 IGHV3-30-3P0DP02 117 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 CIRBPQ14011 172 aaKnown RBP8.91□□□□□ -0.98
SHMT2-229ENST00000557348 SMIM20Q8N5G0 67 aa8.91□□□□□ -0.98
SHMT2-229ENST00000557348 TIRAPP58753 221 aa8.9□□□□□ -0.98
SHMT2-229ENST00000557348 OXLD1Q5BKU9 147 aa8.9□□□□□ -0.98
SHMT2-229ENST00000557348 NTM-AS1Q6ZSK4 140 aa8.9□□□□□ -0.98
SHMT2-229ENST00000557348 FAM19A3Q7Z5A8 133 aa8.9□□□□□ -0.98
SHMT2-229ENST00000557348 STAB1Q9NY15 2570 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 TRBV6-8A0A0A6YYG3 113 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 A0A0J9YXV3 536 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 TRACP01848 142 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 RPS28P62857 69 aaKnown RBP8.89□□□□□ -0.99
SHMT2-229ENST00000557348 HERVK_113P63121 156 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 DAND5Q8N907 189 aa8.89□□□□□ -0.99
SHMT2-229ENST00000557348 INAFM2P0DMQ5 153 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 FAM104AQ969W3 186 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 NDUFA12Q9UI09 145 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms