RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	TENM1	Q9UKZ4	2725 aa		10.87	□□□□□ -0.67
CHFR-223	ENST00000544268	TRBV27	A0A0K0K1C4	114 aa		10.87	□□□□□ -0.67
CHFR-223	ENST00000544268	ACYP1	P07311	99 aa		10.87	□□□□□ -0.67
CHFR-223	ENST00000544268	DYNLRB2	Q8TF09	96 aa		10.87	□□□□□ -0.67
CHFR-223	ENST00000544268	LINC00526	Q96FQ7	95 aa		10.87	□□□□□ -0.67
CHFR-223	ENST00000544268	DEFB114	Q30KQ6	69 aa		10.86	□□□□□ -0.67
CHFR-223	ENST00000544268	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.86	□□□□□ -0.67
CHFR-223	ENST00000544268	RNASE13	Q5GAN3	156 aa	Known RBP	10.86	□□□□□ -0.67
CHFR-223	ENST00000544268		Q6ZSN1	163 aa		10.86	□□□□□ -0.67
CHFR-223	ENST00000544268	SPANXC	Q9NY87	97 aa		10.86	□□□□□ -0.67
CHFR-223	ENST00000544268	ZNF22	P17026	224 aa	Predicted RBP	10.85	□□□□□ -0.67
CHFR-223	ENST00000544268	ATP5G1	P05496	136 aa		10.85	□□□□□ -0.67
CHFR-223	ENST00000544268		Q5XG85	94 aa		10.85	□□□□□ -0.67
CHFR-223	ENST00000544268	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	10.85	□□□□□ -0.67
CHFR-223	ENST00000544268	LST1	O00453	97 aa		10.84	□□□□□ -0.67
CHFR-223	ENST00000544268	ATR	Q13535	2644 aa		10.84	□□□□□ -0.67
CHFR-223	ENST00000544268	RS1	O15537	224 aa		10.84	□□□□□ -0.67
CHFR-223	ENST00000544268		A0A0J9YXY3	114 aa		10.83	□□□□□ -0.68
CHFR-223	ENST00000544268	TINCR	A0A1B0GVN0	87 aa		10.83	□□□□□ -0.68
CHFR-223	ENST00000544268	TRBV6-5	A0A0K0K1A5	114 aa		10.83	□□□□□ -0.68
CHFR-223	ENST00000544268	LINC00643	Q86TS7	51 aa		10.82	□□□□□ -0.68
CHFR-223	ENST00000544268	VWF	P04275	2813 aa		10.81	□□□□□ -0.68
CHFR-223	ENST00000544268	CLEC2B	Q92478	149 aa		10.81	□□□□□ -0.68
CHFR-223	ENST00000544268	PRO0628	Q9UI54	55 aa		10.81	□□□□□ -0.68
CHFR-223	ENST00000544268	MAL	P21145	153 aa		10.8	□□□□□ -0.68
CHFR-223	ENST00000544268	FAM104A	Q969W3	186 aa		10.8	□□□□□ -0.68
CHFR-223	ENST00000544268	LITAF	Q99732	161 aa		10.8	□□□□□ -0.68
CHFR-223	ENST00000544268	IGHV3-38	A0A0C4DH36	116 aa		10.8	□□□□□ -0.68
CHFR-223	ENST00000544268		A0A0J9YXV3	536 aa		10.8	□□□□□ -0.68
CHFR-223	ENST00000544268	OXT	P01178	125 aa		10.79	□□□□□ -0.68
CHFR-223	ENST00000544268	PRSS2	P07478	247 aa		10.79	□□□□□ -0.68
CHFR-223	ENST00000544268	C20orf203	Q8NBC4	194 aa		10.79	□□□□□ -0.68
CHFR-223	ENST00000544268	MAP6D1	Q9H9H5	199 aa		10.79	□□□□□ -0.68
CHFR-223	ENST00000544268	IGLV4-3	A0A075B6K6	122 aa		10.78	□□□□□ -0.68
CHFR-223	ENST00000544268		I3L3M4	83 aa		10.78	□□□□□ -0.68
CHFR-223	ENST00000544268	COX7C	P15954	63 aa		10.78	□□□□□ -0.68
CHFR-223	ENST00000544268	DPH3	Q96FX2	82 aa		10.78	□□□□□ -0.68
CHFR-223	ENST00000544268	IGHV3OR16-12	A0A075B7B8	117 aa		10.78	□□□□□ -0.68
CHFR-223	ENST00000544268	PF4	P02776	101 aa		10.77	□□□□□ -0.68
CHFR-223	ENST00000544268	CXCL5	P42830	114 aa		10.77	□□□□□ -0.68
CHFR-223	ENST00000544268	XCL2	Q9UBD3	114 aa		10.77	□□□□□ -0.68
CHFR-223	ENST00000544268	CRYGA	P11844	174 aa		10.77	□□□□□ -0.69
CHFR-223	ENST00000544268	GAGE2A	Q6NT46	116 aa		10.77	□□□□□ -0.69
CHFR-223	ENST00000544268	SMCR5	Q8TEV8	140 aa		10.77	□□□□□ -0.69
CHFR-223	ENST00000544268	C1orf43	Q9BWL3	253 aa		10.77	□□□□□ -0.69
CHFR-223	ENST00000544268	TRAV8-3	A0A0A6YYJ7	113 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268		A8MZ25	164 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	RPL35A	P18077	110 aa	Known RBP	10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	SDIM1	Q6ZPB5	146 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	IGKV2-29	A2NJV5	120 aa	Predicted RBP	10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	IGHV3-30-3	P0DP02	117 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	C5orf38	Q86SI9	138 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	LINC00482	Q8N8I6	264 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	TRRAP	Q9Y4A5	3859 aa		10.76	□□□□□ -0.69
CHFR-223	ENST00000544268	RHOH	Q15669	191 aa		10.75	□□□□□ -0.69
CHFR-223	ENST00000544268	ODF3L2	Q3SX64	289 aa		10.75	□□□□□ -0.69
CHFR-223	ENST00000544268	ADAMTSL4-AS1	Q5T5F5	129 aa		10.75	□□□□□ -0.69
CHFR-223	ENST00000544268	IGLV1-51	P01701	117 aa		10.75	□□□□□ -0.69
CHFR-223	ENST00000544268	MIA	Q16674	131 aa		10.75	□□□□□ -0.69
CHFR-223	ENST00000544268	C11orf72	Q8NBR9	251 aa		10.74	□□□□□ -0.69
CHFR-223	ENST00000544268	C2orf48	Q96LS8	159 aa		10.74	□□□□□ -0.69
CHFR-223	ENST00000544268	SPATA3	Q8NHX4	192 aa		10.74	□□□□□ -0.69
CHFR-223	ENST00000544268	FBN1	P35555	2871 aa	Known RBP	10.74	□□□□□ -0.69
CHFR-223	ENST00000544268	TIMM21	Q9BVV7	248 aa		10.73	□□□□□ -0.69
CHFR-223	ENST00000544268		V9GYY9	64 aa		10.73	□□□□□ -0.69
CHFR-223	ENST00000544268		A8MTW9	85 aa		10.72	□□□□□ -0.69
CHFR-223	ENST00000544268	WFDC10A	Q9H1F0	79 aa		10.72	□□□□□ -0.69
CHFR-223	ENST00000544268	KRTAP24-1	Q3LI83	254 aa		10.72	□□□□□ -0.69
CHFR-223	ENST00000544268	LINC00467	Q9BRT7	94 aa		10.71	□□□□□ -0.69
CHFR-223	ENST00000544268	CHCHD7	Q9BUK0	85 aa		10.71	□□□□□ -0.69
CHFR-223	ENST00000544268	PKIG	Q9Y2B9	76 aa		10.71	□□□□□ -0.69
CHFR-223	ENST00000544268	IGHV3-53	P01767	116 aa		10.7	□□□□□ -0.7
CHFR-223	ENST00000544268	NDUFA12	Q9UI09	145 aa		10.7	□□□□□ -0.7
CHFR-223	ENST00000544268	ATOX1	O00244	68 aa		10.7	□□□□□ -0.7
CHFR-223	ENST00000544268	HIST1H4A	P62805	103 aa	Known RBP	10.7	□□□□□ -0.7
CHFR-223	ENST00000544268	PYGO1	Q9Y3Y4	419 aa		10.7	□□□□□ -0.7
CHFR-223	ENST00000544268	IGHV1-58	A0A0C4DH39	117 aa		10.69	□□□□□ -0.7
CHFR-223	ENST00000544268	ZNF415	Q09FC8	603 aa		10.69	□□□□□ -0.7
CHFR-223	ENST00000544268	TRAC	P01848	142 aa		10.69	□□□□□ -0.7
CHFR-223	ENST00000544268	LINC00336	Q6ZUF6	198 aa		10.69	□□□□□ -0.7
CHFR-223	ENST00000544268	BEAN1	Q3B7T3	259 aa		10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	C1orf158	Q8N1D5	194 aa		10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	NBEAL2	Q6ZNJ1	2754 aa		10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	NPC2	P61916	151 aa		10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	MRPS36	P82909	103 aa	Known RBP	10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	PRIMA1	Q86XR5	153 aa		10.68	□□□□□ -0.7
CHFR-223	ENST00000544268	hADV29S1	A0JD25	119 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	TIMM17B	O60830	172 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	DAND5	Q8N907	189 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	UBE2D4	Q9Y2X8	147 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	INS	P01308	110 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	TMEM258	P61165	79 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	STH	Q8IWL8	128 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	CYSTM1	Q9H1C7	97 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	C19orf73	Q9NVV2	129 aa		10.67	□□□□□ -0.7
CHFR-223	ENST00000544268	COX7A2L	O14548	114 aa		10.66	□□□□□ -0.7
CHFR-223	ENST00000544268	DAZ2	Q13117	558 aa	Known RBP	10.66	□□□□□ -0.7
CHFR-223	ENST00000544268	DAZ4	Q86SG3	579 aa	Known RBP	10.66	□□□□□ -0.7
CHFR-223	ENST00000544268	DAZ3	Q9NR90	486 aa	Known RBP	10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms