RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ZNF462Q96JM2 2506 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 C3orf84H3BNL1 204 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 LINC00476Q8WZB0 136 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 NCR3O14931 201 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 TACC2O95359 2948 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 NREPQ16612 68 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 C20orf203Q8NBC4 194 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 IGHV1-2P23083 117 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 WT1-ASQ06250 92 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 C17orf58Q2M2W7 97 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 HECTD1Q9ULT8 2610 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 ADGRG4Q8IZF6 3080 aa6.31□□□□□ -1.4
VPS13D-212ENST00000543766 ITPR1Q14643 2758 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 HELZ2Q9BYK8 2649 aaKnown RBP6.3□□□□□ -1.4
VPS13D-212ENST00000543766 KRTAP16-1A8MUX0 517 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 C9orf66Q5T8R8 295 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 C18orf65Q6ZTR6 163 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 MRGPRG-AS1Q2M3A8 158 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 Q5VV11 94 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 LINC00574Q9H8X3 128 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 IGSF10Q6WRI0 2623 aa6.3□□□□□ -1.4
VPS13D-212ENST00000543766 IGKV3D-20A0A0C4DH25 116 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 hDV103S1A0JD37 113 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 SAA1P0DJI8 122 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-212ENST00000543766 ASH1LQ9NR48 2969 aaKnown RBP6.29□□□□□ -1.4
VPS13D-212ENST00000543766 CUBNO60494 3623 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 BSNQ9UPA5 3926 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 ATP5EP2Q5VTU8 51 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 AMELXQ99217 191 aa6.29□□□□□ -1.4
VPS13D-212ENST00000543766 C11orf86A6NJI1 115 aa6.28□□□□□ -1.4
VPS13D-212ENST00000543766 FAM74A4Q5TZK3 123 aa6.28□□□□□ -1.4
VPS13D-212ENST00000543766 MRPL33O75394 65 aaKnown RBP6.28□□□□□ -1.4
VPS13D-212ENST00000543766 HIGD2AQ9BW72 106 aa6.28□□□□□ -1.4
VPS13D-212ENST00000543766 NAV2Q8IVL1 2488 aa6.28□□□□□ -1.4
VPS13D-212ENST00000543766 TSPEAR-AS2P59090 65 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 Q8N3U1 123 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 LEAP2Q969E1 77 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 A0A1W2PNU3 283 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-212ENST00000543766 MOBPQ13875 183 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 TMEM167AQ8TBQ9 72 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 PTPN13Q12923 2485 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 SETXQ7Z333 2677 aaKnown RBP6.27□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV1-18A0A0C4DH31 117 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 ERHP84090 104 aaKnown RBP6.27□□□□□ -1.41
VPS13D-212ENST00000543766 RAI1Q7Z5J4 1906 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-212ENST00000543766 BAHCC1Q9P281 2608 aa6.27□□□□□ -1.41
VPS13D-212ENST00000543766 MSRB1Q9NZV6 116 aa6.26□□□□□ -1.41
VPS13D-212ENST00000543766 LRRK2Q5S007 2527 aa6.26□□□□□ -1.41
VPS13D-212ENST00000543766 ZNF833PQ6ZTB9 187 aa6.26□□□□□ -1.41
VPS13D-212ENST00000543766 ZFHX3Q15911 3703 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGLV2-23P01705 113 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 MIAQ16674 131 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 ODF3L2Q3SX64 289 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 Q8N814 137 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 CFAP46Q8IYW2 2715 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGLV3-9A0A075B6K5 115 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV3OR16-9A0A0B4J2B5 98 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV3-48P01763 117 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV3-64DA0A0J9YX35 117 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 CNEP1R1Q8N9A8 125 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 LIMD2Q9BT23 127 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 TTTY12Q9BZ98 90 aa6.25□□□□□ -1.41
VPS13D-212ENST00000543766 IGLV9-49A0A0B4J1Y8 123 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 PLA2G1BP04054 148 aaKnown RBP6.24□□□□□ -1.41
VPS13D-212ENST00000543766 GNLYP22749 145 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 C2orf66Q6UXQ4 117 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 H3BRN7 92 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 GCN1Q92616 2671 aaKnown RBP6.24□□□□□ -1.41
VPS13D-212ENST00000543766 SRRM5B3KS81 715 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 NAV3Q8IVL0 2385 aa6.24□□□□□ -1.41
VPS13D-212ENST00000543766 TRBV6-8A0A0A6YYG3 113 aa6.23□□□□□ -1.41
VPS13D-212ENST00000543766 TRGV3P03979 118 aa6.23□□□□□ -1.41
VPS13D-212ENST00000543766 IGLV4-69A0A075B6H9 119 aa6.23□□□□□ -1.41
VPS13D-212ENST00000543766 SPINK14Q6IE38 97 aa6.23□□□□□ -1.41
VPS13D-212ENST00000543766 SEC61BP60468 96 aaKnown RBP6.23□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV4-4A0A075B6R2 117 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 IGHV3-72A0A0B4J1Y9 119 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 PSCAO43653 123 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 LHBP01229 141 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 CDC42SE1Q9NRR8 79 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 CDK2AP2O75956 126 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 Q6ZTC4 211 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 BPY2O14599 106 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 PPP1R17O96001 155 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 LMO4P61968 165 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 C10orf55Q5SWW7 151 aa6.22□□□□□ -1.41
VPS13D-212ENST00000543766 SLPIP03973 132 aa6.21□□□□□ -1.41
VPS13D-212ENST00000543766 RNASE3P12724 160 aaKnown RBP6.21□□□□□ -1.41
VPS13D-212ENST00000543766 PDE6HQ13956 83 aa6.21□□□□□ -1.41
VPS13D-212ENST00000543766 C22orf34Q6ZV56 151 aa6.21□□□□□ -1.41
VPS13D-212ENST00000543766 MAP1AP78559 2803 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-212ENST00000543766 LINC01547P58512 204 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-212ENST00000543766 TRBV10-3A0A0K0K1G6 114 aa6.21□□□□□ -1.42
VPS13D-212ENST00000543766 KIF25-AS1Q9Y6Z4 181 aa6.21□□□□□ -1.42
VPS13D-212ENST00000543766 CSAG1Q6PB30 78 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 ORMDL1Q9P0S3 153 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 FLNCQ14315 2725 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 TRBV10-1A0A0K0K1A3 114 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 PCNX1Q96RV3 2341 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 WNK2Q9Y3S1 2297 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms