RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 TRAV13-1A0A0B4J241 112 aa8.6□□□□□ -1.03
SMAD3-204ENST00000540846 COX6A2Q02221 97 aa8.6□□□□□ -1.03
SMAD3-204ENST00000540846 MRPL23Q16540 153 aaKnown RBP8.6□□□□□ -1.03
SMAD3-204ENST00000540846 CEND1Q8N111 149 aa8.6□□□□□ -1.03
SMAD3-204ENST00000540846 CDKN2A-AS1Q9UH64 79 aa8.6□□□□□ -1.03
SMAD3-204ENST00000540846 A0A096LPF7 62 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 TRAV8-3A0A0A6YYJ7 113 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 A0A1B0GUV1 79 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 A6NDN8 102 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 H3BNG1 76 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 TAX1BP3O14907 124 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 SPINK8P0C7L1 97 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 GCSHP23434 173 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 FXYD2P54710 66 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 ICOSQ9Y6W8 199 aa8.59□□□□□ -1.03
SMAD3-204ENST00000540846 HIST1H4GQ99525 98 aa8.58□□□□□ -1.04
SMAD3-204ENST00000540846 DYNC2H1Q8NCM8 4307 aaKnown RBP8.58□□□□□ -1.04
SMAD3-204ENST00000540846 IGLV5-39A0A0G2JS06 123 aa8.57□□□□□ -1.04
SMAD3-204ENST00000540846 RBX1P62877 108 aa8.57□□□□□ -1.04
SMAD3-204ENST00000540846 SPANXB1Q9NS25 103 aaPredicted RBP8.57□□□□□ -1.04
SMAD3-204ENST00000540846 COX11Q9Y6N1 276 aa8.57□□□□□ -1.04
SMAD3-204ENST00000540846 TENM2Q9NT68 2774 aa8.57□□□□□ -1.04
SMAD3-204ENST00000540846 ZFAND6Q6FIF0 208 aa8.56□□□□□ -1.04
SMAD3-204ENST00000540846 SMIM1B2RUZ4 78 aa8.56□□□□□ -1.04
SMAD3-204ENST00000540846 K7EP13 123 aa8.56□□□□□ -1.04
SMAD3-204ENST00000540846 C10orf126Q8N4M7 172 aa8.56□□□□□ -1.04
SMAD3-204ENST00000540846 STARD9Q9P2P6 4700 aa8.55□□□□□ -1.04
SMAD3-204ENST00000540846 Q6ZVH6 145 aa8.55□□□□□ -1.04
SMAD3-204ENST00000540846 NDUFA12Q9UI09 145 aa8.55□□□□□ -1.04
SMAD3-204ENST00000540846 A0A0J9YXY3 114 aa8.54□□□□□ -1.04
SMAD3-204ENST00000540846 TMEM262E9PQX1 116 aa8.54□□□□□ -1.04
SMAD3-204ENST00000540846 PTTG1IPP53801 180 aa8.54□□□□□ -1.04
SMAD3-204ENST00000540846 LELP1Q5T871 98 aa8.54□□□□□ -1.04
SMAD3-204ENST00000540846 NDUFA1O15239 70 aa8.53□□□□□ -1.04
SMAD3-204ENST00000540846 SRSF9Q13242 221 aaKnown RBP eCLIP8.53□□□□□ -1.04
SMAD3-204ENST00000540846 WWC2-AS2Q96NR7 200 aa8.53□□□□□ -1.04
SMAD3-204ENST00000540846 LINC00959A0A1B0GUT2 108 aa8.52□□□□□ -1.04
SMAD3-204ENST00000540846 A0A1B0GWB2 263 aa8.52□□□□□ -1.04
SMAD3-204ENST00000540846 NHP2Q9NX24 153 aaKnown RBP8.52□□□□□ -1.04
SMAD3-204ENST00000540846 IGHV3OR16-9A0A0B4J2B5 98 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 NUPR2A6NF83 97 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 IGLL5B9A064 214 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 TMEM238C9JI98 176 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 CCL25O15444 150 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 IGHV3-30P01768 117 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 SMIM13P0DJ93 91 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 IGHV3-30-5P0DP03 117 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 C15orf53Q8NAA6 179 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 MUC7Q8TAX7 377 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 LITAFQ99732 161 aa8.52□□□□□ -1.05
SMAD3-204ENST00000540846 IGKV3OR2-268A0A0C4DH90 116 aa8.51□□□□□ -1.05
SMAD3-204ENST00000540846 TMEM238LA0A1B0GVL6 79 aa8.51□□□□□ -1.05
SMAD3-204ENST00000540846 A6NJY4 79 aa8.51□□□□□ -1.05
SMAD3-204ENST00000540846 K7ERJ3 54 aa8.51□□□□□ -1.05
SMAD3-204ENST00000540846 APLNQ9ULZ1 77 aa8.51□□□□□ -1.05
SMAD3-204ENST00000540846 A0A087WZ39 114 aa8.5□□□□□ -1.05
SMAD3-204ENST00000540846 C9orf118A6NHY6 69 aa8.5□□□□□ -1.05
SMAD3-204ENST00000540846 TIMM17BO60830 172 aa8.5□□□□□ -1.05
SMAD3-204ENST00000540846 SS18Q15532 418 aa8.5□□□□□ -1.05
SMAD3-204ENST00000540846 LYPD5Q6UWN5 251 aa8.5□□□□□ -1.05
SMAD3-204ENST00000540846 Q8N3U1 123 aa8.49□□□□□ -1.05
SMAD3-204ENST00000540846 ZNF625Q96I27 306 aaPredicted RBP8.49□□□□□ -1.05
SMAD3-204ENST00000540846 ESRGQ1W209 222 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 LINC00269Q8N2A0 174 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 SPANXDQ9BXN6 97 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 Q9H8V8 135 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 SPANXCQ9NY87 97 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 PLECQ15149 4684 aaKnown RBP8.48□□□□□ -1.05
SMAD3-204ENST00000540846 ANGP03950 147 aaKnown RBP8.48□□□□□ -1.05
SMAD3-204ENST00000540846 CLPSL2Q6UWE3 100 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 LINC01561Q8N1V8 128 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 RAB37Q96AX2 223 aa8.48□□□□□ -1.05
SMAD3-204ENST00000540846 REG3AQ06141 175 aa8.47□□□□□ -1.05
SMAD3-204ENST00000540846 MIAQ16674 131 aa8.47□□□□□ -1.05
SMAD3-204ENST00000540846 COX7B2Q8TF08 81 aa8.47□□□□□ -1.05
SMAD3-204ENST00000540846 KLK5Q9Y337 293 aaPredicted RBP8.47□□□□□ -1.05
SMAD3-204ENST00000540846 LYSTQ99698 3801 aa8.46□□□□□ -1.05
SMAD3-204ENST00000540846 H3BUT2 72 aa8.46□□□□□ -1.06
SMAD3-204ENST00000540846 XCL1P47992 114 aa8.46□□□□□ -1.06
SMAD3-204ENST00000540846 HERV-K104P63124 156 aa8.46□□□□□ -1.06
SMAD3-204ENST00000540846 ADAMTSL4-AS1Q5T5F5 129 aa8.46□□□□□ -1.06
SMAD3-204ENST00000540846 PRR34Q9NV39 138 aa8.46□□□□□ -1.06
SMAD3-204ENST00000540846 RPL24P83731 157 aaKnown RBP8.45□□□□□ -1.06
SMAD3-204ENST00000540846 VAMP3Q15836 100 aa8.45□□□□□ -1.06
SMAD3-204ENST00000540846 C5orf38Q86SI9 138 aa8.45□□□□□ -1.06
SMAD3-204ENST00000540846 A0A1W2PPM0 123 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 CASC10Q5T4H9 136 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 CD164L2Q6UWJ8 174 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 MUSTN1Q8IVN3 82 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 CHCHD10Q8WYQ3 142 aaPredicted RBP8.44□□□□□ -1.06
SMAD3-204ENST00000540846 NAA38Q9BRA0 125 aaKnown RBP8.44□□□□□ -1.06
SMAD3-204ENST00000540846 LINC00588Q9Y4M8 146 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 A4D1N5 150 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 UBE2V1Q13404 147 aa8.44□□□□□ -1.06
SMAD3-204ENST00000540846 CIRBPQ14011 172 aaKnown RBP8.44□□□□□ -1.06
SMAD3-204ENST00000540846 CFC1BP0CG36 223 aa8.43□□□□□ -1.06
SMAD3-204ENST00000540846 CFC1P0CG37 223 aa8.43□□□□□ -1.06
SMAD3-204ENST00000540846 IFITM1P13164 125 aa8.43□□□□□ -1.06
SMAD3-204ENST00000540846 SFTA2Q6UW10 78 aa8.43□□□□□ -1.06
SMAD3-204ENST00000540846 WFDC10BQ8IUB3 73 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms