RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NDUFA1O15239 70 aa9.38□□□□□ -0.91
LDLR-203ENST00000535915 DAND5Q8N907 189 aa9.38□□□□□ -0.91
LDLR-203ENST00000535915 CSDC2Q9Y534 153 aaKnown RBP9.37□□□□□ -0.91
LDLR-203ENST00000535915 TIMM17BO60830 172 aa9.37□□□□□ -0.91
LDLR-203ENST00000535915 MEIG1Q5JSS6 88 aa9.37□□□□□ -0.91
LDLR-203ENST00000535915 TRBV30A0A0K0K1B3 111 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 PLAC8L1A1L4L8 177 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 TRIAP1O43715 76 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 ATXN8Q156A1 80 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 UBE2L6O14933 153 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 CIRBPQ14011 172 aaKnown RBP9.36□□□□□ -0.91
LDLR-203ENST00000535915 Q9H8V8 135 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 C19orf73Q9NVV2 129 aa9.36□□□□□ -0.91
LDLR-203ENST00000535915 IGLV5-39A0A0G2JS06 123 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 NTN5Q8WTR8 489 aaPredicted RBP9.35□□□□□ -0.91
LDLR-203ENST00000535915 CDC42SE2Q9NRR3 84 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 ZNF625Q96I27 306 aaPredicted RBP9.35□□□□□ -0.91
LDLR-203ENST00000535915 ICOSQ9Y6W8 199 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 LOC100131303A0A0U1RQF7 123 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 Q6Q795 121 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 FAM19A3Q7Z5A8 133 aa9.35□□□□□ -0.91
LDLR-203ENST00000535915 TRAV8-4A0A0B4J246 113 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 SMIM1B2RUZ4 78 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 C15orf53Q8NAA6 179 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 TMEM243Q9BU79 118 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 TRGV4A0A0C4DH28 118 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 A0A0U1RRA0 63 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 PLA2G2AP14555 144 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 LINC01620Q4KN68 170 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 CSNK1G2-AS1Q8NCQ2 148 aa9.34□□□□□ -0.91
LDLR-203ENST00000535915 HELZ2Q9BYK8 2649 aaKnown RBP9.33□□□□□ -0.92
LDLR-203ENST00000535915 KMT2BQ9UMN6 2715 aaPredicted RBP9.33□□□□□ -0.92
LDLR-203ENST00000535915 COX6CP09669 75 aa9.33□□□□□ -0.92
LDLR-203ENST00000535915 HILS1P60008 231 aa9.33□□□□□ -0.92
LDLR-203ENST00000535915 TRBV6-4A0A1B0GX49 114 aa9.32□□□□□ -0.92
LDLR-203ENST00000535915 RPL13AP40429 203 aaKnown RBP9.32□□□□□ -0.92
LDLR-203ENST00000535915 OVOL2Q9BRP0 275 aa9.32□□□□□ -0.92
LDLR-203ENST00000535915 TEX49A0A1B0GTD5 131 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 M0QXV9 152 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 PRIMA1Q86XR5 153 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 UNC79Q9P2D8 2635 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 C3orf56Q8N813 242 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 LINC00308Q8TCZ7 52 aa9.31□□□□□ -0.92
LDLR-203ENST00000535915 F5H768 121 aa9.3□□□□□ -0.92
LDLR-203ENST00000535915 TRBV10-2A0A0K0K1G8 114 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 J3QKU1 62 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 CLEC2BQ92478 149 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 CHCHD5Q9BSY4 110 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 PPDPFQ9H3Y8 114 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 HIVEP2P31629 2446 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 FHL2Q14192 279 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 SMR3AQ99954 134 aa9.29□□□□□ -0.92
LDLR-203ENST00000535915 GCN1Q92616 2671 aaKnown RBP9.28□□□□□ -0.92
LDLR-203ENST00000535915 IGKV3OR2-268A0A0C4DH90 116 aa9.28□□□□□ -0.92
LDLR-203ENST00000535915 H7C423 109 aa9.28□□□□□ -0.92
LDLR-203ENST00000535915 PF4P02776 101 aa9.28□□□□□ -0.92
LDLR-203ENST00000535915 TMEM126AQ9H061 195 aa9.28□□□□□ -0.92
LDLR-203ENST00000535915 COPS9Q8WXC6 57 aa9.28□□□□□ -0.92
LDLR-203ENST00000535915 FASNP49327 2511 aaKnown RBP9.28□□□□□ -0.92
LDLR-203ENST00000535915 UBE2WQ96B02 151 aa9.27□□□□□ -0.93
LDLR-203ENST00000535915 SOSTDC1Q6X4U4 206 aa9.27□□□□□ -0.93
LDLR-203ENST00000535915 FN1P02751 2386 aaKnown RBP9.26□□□□□ -0.93
LDLR-203ENST00000535915 TRBV6-8A0A0A6YYG3 113 aa9.26□□□□□ -0.93
LDLR-203ENST00000535915 DEFB130BP0DP73 79 aa9.26□□□□□ -0.93
LDLR-203ENST00000535915 DEFB130AP0DP74 79 aa9.26□□□□□ -0.93
LDLR-203ENST00000535915 C2orf82Q6UX34 121 aa9.26□□□□□ -0.93
LDLR-203ENST00000535915 KRTAP10-3P60369 221 aa9.26□□□□□ -0.93
LDLR-203ENST00000535915 LST1O00453 97 aa9.25□□□□□ -0.93
LDLR-203ENST00000535915 IGLV4-60A0A075B6I1 120 aa9.25□□□□□ -0.93
LDLR-203ENST00000535915 LINC01600Q96MT4 127 aa9.25□□□□□ -0.93
LDLR-203ENST00000535915 NBEAL2Q6ZNJ1 2754 aa9.25□□□□□ -0.93
LDLR-203ENST00000535915 TOMM7Q9P0U1 55 aa9.24□□□□□ -0.93
LDLR-203ENST00000535915 VWFP04275 2813 aa9.24□□□□□ -0.93
LDLR-203ENST00000535915 COX7B2Q8TF08 81 aa9.24□□□□□ -0.93
LDLR-203ENST00000535915 H3BT86 120 aa9.23□□□□□ -0.93
LDLR-203ENST00000535915 LINC00482Q8N8I6 264 aa9.23□□□□□ -0.93
LDLR-203ENST00000535915 KIR2DL5BQ8NHK3 375 aa9.22□□□□□ -0.93
LDLR-203ENST00000535915 MRPL23Q16540 153 aaKnown RBP9.22□□□□□ -0.93
LDLR-203ENST00000535915 GYPEP15421 78 aa9.2□□□□□ -0.94
LDLR-203ENST00000535915 IGHV3OR16-9A0A0B4J2B5 98 aa9.2□□□□□ -0.94
LDLR-203ENST00000535915 COX7A2LO14548 114 aa9.2□□□□□ -0.94
LDLR-203ENST00000535915 FAM236AA0A1B0GUQ0 79 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 FAM236BA0A1B0GV22 79 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 MIR7-3HGQ8N6C7 128 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 LY6G6DO95868 133 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 C9orf153Q5TBE3 101 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 C5orf38Q86SI9 138 aa9.19□□□□□ -0.94
LDLR-203ENST00000535915 LINC00612Q8N6U2 182 aa9.18□□□□□ -0.94
LDLR-203ENST00000535915 X6R8D5 127 aa9.18□□□□□ -0.94
LDLR-203ENST00000535915 HECTD1Q9ULT8 2610 aa9.18□□□□□ -0.94
LDLR-203ENST00000535915 A0A087WZ39 114 aa9.18□□□□□ -0.94
LDLR-203ENST00000535915 LINC00158P58513 81 aa9.18□□□□□ -0.94
LDLR-203ENST00000535915 LINC00959A0A1B0GUT2 108 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 A0A096LPF7 62 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 TRBV7-7A0A0K0K1E9 115 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 LOC107984640A0A0U1RRK4 108 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 FAM240AA0A1B0GVK7 77 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 C5orf47Q569G3 176 aa9.17□□□□□ -0.94
LDLR-203ENST00000535915 SMIM9A6NGZ8 99 aa9.16□□□□□ -0.94
LDLR-203ENST00000535915 SPATA3Q8NHX4 192 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms