RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 A0A096LNJ9 63 aa9.58□□□□□ -0.88
CPSF1-206ENST00000531480 IGIPA6NJ69 53 aa9.58□□□□□ -0.88
CPSF1-206ENST00000531480 PLNP26678 52 aa9.58□□□□□ -0.88
CPSF1-206ENST00000531480 RPL39P62891 51 aaKnown RBP9.58□□□□□ -0.88
CPSF1-206ENST00000531480 MRPS36P82909 103 aaKnown RBP9.58□□□□□ -0.88
CPSF1-206ENST00000531480 TEX43Q6ZNM6 134 aa9.58□□□□□ -0.88
CPSF1-206ENST00000531480 C1orf43Q9BWL3 253 aa9.58□□□□□ -0.88
CPSF1-206ENST00000531480 PSCAO43653 123 aa9.57□□□□□ -0.88
CPSF1-206ENST00000531480 CLPSL2Q6UWE3 100 aa9.57□□□□□ -0.88
CPSF1-206ENST00000531480 ZNF664Q8N3J9 261 aa9.57□□□□□ -0.88
CPSF1-206ENST00000531480 CCL25O15444 150 aa9.56□□□□□ -0.88
CPSF1-206ENST00000531480 H0Y8G0 127 aa9.55□□□□□ -0.88
CPSF1-206ENST00000531480 DPM2O94777 84 aa9.55□□□□□ -0.88
CPSF1-206ENST00000531480 WFDC2Q14508 124 aa9.55□□□□□ -0.88
CPSF1-206ENST00000531480 LINC01545Q5VT33 79 aa9.55□□□□□ -0.88
CPSF1-206ENST00000531480 CHTOPQ9Y3Y2 248 aaKnown RBP9.55□□□□□ -0.88
CPSF1-206ENST00000531480 PCLOQ9Y6V0 5065 aa9.55□□□□□ -0.88
CPSF1-206ENST00000531480 BAALCQ8WXS3 180 aa9.54□□□□□ -0.88
CPSF1-206ENST00000531480 DNAH5Q8TE73 4624 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 LINC00959A0A1B0GUT2 108 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 F8VRH5 84 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 EREGO14944 169 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 KRTAP10-2P60368 255 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 Q6ZUT4 128 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 CST9LQ9H4G1 147 aa9.53□□□□□ -0.88
CPSF1-206ENST00000531480 IGLV10-54A0A075B6I4 117 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 IGLV4-3A0A075B6K6 122 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 IGKCP01834 107 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 HERVK_113P61574 105 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 PYY3Q5JQD4 70 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 CDPF1Q6NVV7 123 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 Q8N814 137 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 CHCHD10Q8WYQ3 142 aaPredicted RBP9.52□□□□□ -0.89
CPSF1-206ENST00000531480 C12orf57Q99622 126 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 VAMP8Q9BV40 100 aa9.52□□□□□ -0.89
CPSF1-206ENST00000531480 LINC00173Q6ZV60 143 aa9.51□□□□□ -0.89
CPSF1-206ENST00000531480 PGPEP1Q9NXJ5 209 aa9.51□□□□□ -0.89
CPSF1-206ENST00000531480 FOXI1Q12951 378 aa9.5□□□□□ -0.89
CPSF1-206ENST00000531480 ODF1Q14990 250 aa9.5□□□□□ -0.89
CPSF1-206ENST00000531480 LINC00518Q8N0U6 118 aa9.5□□□□□ -0.89
CPSF1-206ENST00000531480 NTN5Q8WTR8 489 aaPredicted RBP9.5□□□□□ -0.89
CPSF1-206ENST00000531480 AMELXQ99217 191 aa9.5□□□□□ -0.89
CPSF1-206ENST00000531480 OPRPNQ99935 248 aaPredicted RBP9.5□□□□□ -0.89
CPSF1-206ENST00000531480 GEMIN7Q9H840 131 aaKnown RBP9.5□□□□□ -0.89
CPSF1-206ENST00000531480 IGKV3OR2-268A0A0C4DH90 116 aa9.49□□□□□ -0.89
CPSF1-206ENST00000531480 H3BRM9 83 aa9.49□□□□□ -0.89
CPSF1-206ENST00000531480 HERVK_113P63121 156 aa9.49□□□□□ -0.89
CPSF1-206ENST00000531480 SS18Q15532 418 aa9.49□□□□□ -0.89
CPSF1-206ENST00000531480 RNASE13Q5GAN3 156 aaKnown RBP9.49□□□□□ -0.89
CPSF1-206ENST00000531480 CD164L2Q6UWJ8 174 aa9.49□□□□□ -0.89
CPSF1-206ENST00000531480 GAGE12HA6NDE8 117 aa9.48□□□□□ -0.89
CPSF1-206ENST00000531480 USP17L23D6RBM5 183 aa9.48□□□□□ -0.89
CPSF1-206ENST00000531480 LRP1BQ9NZR2 4599 aa9.47□□□□□ -0.89
CPSF1-206ENST00000531480 TINCRA0A1B0GVN0 87 aa9.47□□□□□ -0.89
CPSF1-206ENST00000531480 TSTD3H0UI37 97 aa9.47□□□□□ -0.89
CPSF1-206ENST00000531480 LECT2O14960 151 aa9.47□□□□□ -0.89
CPSF1-206ENST00000531480 C14orf177Q52M58 125 aa9.47□□□□□ -0.89
CPSF1-206ENST00000531480 MRPL35Q9NZE8 188 aaKnown RBP9.47□□□□□ -0.89
CPSF1-206ENST00000531480 FAM19A3Q7Z5A8 133 aa9.46□□□□□ -0.9
CPSF1-206ENST00000531480 RYR1P21817 5038 aa9.46□□□□□ -0.9
CPSF1-206ENST00000531480 TRAV13-1A0A0B4J241 112 aa9.45□□□□□ -0.9
CPSF1-206ENST00000531480 IGLC3P0DOY3 106 aa9.45□□□□□ -0.9
CPSF1-206ENST00000531480 XCL1P47992 114 aa9.45□□□□□ -0.9
CPSF1-206ENST00000531480 C15orf56Q8N910 161 aa9.45□□□□□ -0.9
CPSF1-206ENST00000531480 IGHV3OR16-9A0A0B4J2B5 98 aa9.44□□□□□ -0.9
CPSF1-206ENST00000531480 C16orf90A8MZG2 172 aa9.44□□□□□ -0.9
CPSF1-206ENST00000531480 UBE2D1P51668 147 aa9.44□□□□□ -0.9
CPSF1-206ENST00000531480 TMEM170BQ5T4T1 132 aa9.44□□□□□ -0.9
CPSF1-206ENST00000531480 PMCHL2Q9BQD1 86 aa9.44□□□□□ -0.9
CPSF1-206ENST00000531480 C11orf86A6NJI1 115 aa9.43□□□□□ -0.9
CPSF1-206ENST00000531480 LINC00242Q5T6M2 205 aa9.43□□□□□ -0.9
CPSF1-206ENST00000531480 CFAP161Q6P656 301 aa9.43□□□□□ -0.9
CPSF1-206ENST00000531480 CHAC1Q9BUX1 264 aa9.43□□□□□ -0.9
CPSF1-206ENST00000531480 GVQW2A0A096LPI5 108 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-206ENST00000531480 IGLV5-52A0A0A0MRZ9 124 aa9.42□□□□□ -0.9
CPSF1-206ENST00000531480 FUSP35637 526 aaKnown RBP eCLIP9.42□□□□□ -0.9
CPSF1-206ENST00000531480 CNBPP62633 177 aaKnown RBP9.42□□□□□ -0.9
CPSF1-206ENST00000531480 SPATA45Q537H7 98 aa9.42□□□□□ -0.9
CPSF1-206ENST00000531480 ZC2HC1BQ5TFG8 222 aa9.42□□□□□ -0.9
CPSF1-206ENST00000531480 PAM16Q9Y3D7 125 aa9.42□□□□□ -0.9
CPSF1-206ENST00000531480 IGHV1-58A0A0C4DH39 117 aa9.41□□□□□ -0.9
CPSF1-206ENST00000531480 ATOH7Q8N100 152 aa9.41□□□□□ -0.9
CPSF1-206ENST00000531480 LINC00469Q8N7U9 141 aa9.41□□□□□ -0.9
CPSF1-206ENST00000531480 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
CPSF1-206ENST00000531480 ABCA13Q86UQ4 5058 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.4□□□□□ -0.9
CPSF1-206ENST00000531480 A0A0J9YXV3 536 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 COX7A2LO14548 114 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 GCSHP23434 173 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 SFTA2Q6UW10 78 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 LINC01561Q8N1V8 128 aa9.4□□□□□ -0.9
CPSF1-206ENST00000531480 SLPIP03973 132 aa9.39□□□□□ -0.91
CPSF1-206ENST00000531480 KRTAP10-1P60331 282 aa9.39□□□□□ -0.91
CPSF1-206ENST00000531480 IGLV4-69A0A075B6H9 119 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 A0A087WZ39 114 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 hDV102S1A0JD36 115 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 E9PLD3 99 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 APOMO95445 188 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 COX6A2Q02221 97 aa9.38□□□□□ -0.91
CPSF1-206ENST00000531480 C9orf163Q8N9P6 203 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms