RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 TRGV2A0A075B6R0 118 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 GAGE2BQ13066 116 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 GAGE2EQ4V326 116 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 GAGE2DQ9UEU5 116 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 LOC100131303A0A0U1RQF7 123 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 NOTCH3Q9UM47 2321 aa13.79□□□□□ -0.2
PCF11-203ENST00000530304 NIPBLQ6KC79 2804 aaeCLIP13.79□□□□□ -0.26e-27■□□□□ 8.6
PCF11-203ENST00000530304 HERV-K104P63124 156 aa13.78□□□□□ -0.2
PCF11-203ENST00000530304 SHISA2Q6UWI4 295 aa13.78□□□□□ -0.2
PCF11-203ENST00000530304 C16orf74Q96GX8 76 aa13.78□□□□□ -0.2
PCF11-203ENST00000530304 ANAPC13Q9BS18 74 aa13.78□□□□□ -0.2
PCF11-203ENST00000530304 COX7A2LO14548 114 aa13.78□□□□□ -0.2
PCF11-203ENST00000530304 RPL35AP18077 110 aaKnown RBP13.78□□□□□ -0.2
PCF11-203ENST00000530304 DEFB121Q5J5C9 76 aa13.77□□□□□ -0.2
PCF11-203ENST00000530304 C15orf53Q8NAA6 179 aa13.77□□□□□ -0.21
PCF11-203ENST00000530304 CMC4P56277 68 aaPredicted RBP13.77□□□□□ -0.21
PCF11-203ENST00000530304 SETXQ7Z333 2677 aaKnown RBP13.76□□□□□ -0.21
PCF11-203ENST00000530304 C2CD3Q4AC94 2353 aa13.76□□□□□ -0.21
PCF11-203ENST00000530304 TRBV6-4A0A1B0GX49 114 aa13.75□□□□□ -0.21
PCF11-203ENST00000530304 PLA2G2AP14555 144 aa13.75□□□□□ -0.21
PCF11-203ENST00000530304 LINC01006Q8NI28 216 aa13.75□□□□□ -0.21
PCF11-203ENST00000530304 SVIPQ8NHG7 77 aa13.74□□□□□ -0.21
PCF11-203ENST00000530304 C19orf73Q9NVV2 129 aa13.74□□□□□ -0.21
PCF11-203ENST00000530304 CSNK1G2-AS1Q8NCQ2 148 aa13.74□□□□□ -0.21
PCF11-203ENST00000530304 TRGV4A0A0C4DH28 118 aa13.73□□□□□ -0.21
PCF11-203ENST00000530304 OVOL2Q9BRP0 275 aa13.73□□□□□ -0.21
PCF11-203ENST00000530304 JMJD1CQ15652 2540 aa13.73□□□□□ -0.21
PCF11-203ENST00000530304 GAGE6Q13070 117 aa13.73□□□□□ -0.21
PCF11-203ENST00000530304 FAM240AA0A1B0GVK7 77 aa13.72□□□□□ -0.21
PCF11-203ENST00000530304 IGLV1-51P01701 117 aa13.72□□□□□ -0.21
PCF11-203ENST00000530304 Q6Q795 121 aa13.72□□□□□ -0.21
PCF11-203ENST00000530304 NHLRC4P0CG21 123 aaPredicted RBP13.72□□□□□ -0.21
PCF11-203ENST00000530304 IGKV3OR2-268A0A0C4DH90 116 aa13.71□□□□□ -0.21
PCF11-203ENST00000530304 COX7B2Q8TF08 81 aa13.71□□□□□ -0.21
PCF11-203ENST00000530304 SETD2Q9BYW2 2564 aaPredicted RBP13.71□□□□□ -0.21
PCF11-203ENST00000530304 NDUFV3P56181 108 aaKnown RBP13.71□□□□□ -0.22
PCF11-203ENST00000530304 TTC32Q5I0X7 151 aa13.71□□□□□ -0.22
PCF11-203ENST00000530304 FAM110AQ9BQ89 295 aa13.71□□□□□ -0.22
PCF11-203ENST00000530304 PPDPFQ9H3Y8 114 aa13.71□□□□□ -0.22
PCF11-203ENST00000530304 FLNAP21333 2647 aaKnown RBP13.7□□□□□ -0.22
PCF11-203ENST00000530304 CCDC168Q8NDH2 2452 aa13.7□□□□□ -0.22
PCF11-203ENST00000530304 IGLV4-60A0A075B6I1 120 aa13.7□□□□□ -0.22
PCF11-203ENST00000530304 TOMM7Q9P0U1 55 aa13.69□□□□□ -0.22
PCF11-203ENST00000530304 FHL2Q14192 279 aa13.69□□□□□ -0.22
PCF11-203ENST00000530304 MRPL23Q16540 153 aaKnown RBP13.69□□□□□ -0.22
PCF11-203ENST00000530304 C16orf95Q9H693 158 aa13.69□□□□□ -0.22
PCF11-203ENST00000530304 TRBV6-8A0A0A6YYG3 113 aa13.68□□□□□ -0.22
PCF11-203ENST00000530304 MIR7-3HGQ8N6C7 128 aa13.68□□□□□ -0.22
PCF11-203ENST00000530304 TRACP01848 142 aa13.67□□□□□ -0.22
PCF11-203ENST00000530304 HIST2H2BCQ6DN03 193 aa13.67□□□□□ -0.22
PCF11-203ENST00000530304 FAM218AQ96MZ4 157 aa13.67□□□□□ -0.22
PCF11-203ENST00000530304 RNASE1P07998 156 aaKnown RBP13.67□□□□□ -0.22
PCF11-203ENST00000530304 CHCHD5Q9BSY4 110 aa13.66□□□□□ -0.22
PCF11-203ENST00000530304 TRAV13-2A0A0B4J235 113 aa13.66□□□□□ -0.22
PCF11-203ENST00000530304 IGHV3OR16-9A0A0B4J2B5 98 aa13.65□□□□□ -0.22
PCF11-203ENST00000530304 SS18L2Q9UHA2 77 aa13.65□□□□□ -0.22
PCF11-203ENST00000530304 PF4P02776 101 aa13.65□□□□□ -0.22
PCF11-203ENST00000530304 BAALC-AS2P0C853 105 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 KRTAP1-1Q07627 177 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 LINC00337Q8N6G1 96 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 SND1-IT1Q9HBX3 110 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 IGKV2-28A0A075B6P5 120 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 IGKV2D-28P01615 120 aa13.64□□□□□ -0.23
PCF11-203ENST00000530304 CRPP02741 224 aa13.63□□□□□ -0.23
PCF11-203ENST00000530304 RPL28P46779 137 aaKnown RBP13.63□□□□□ -0.23
PCF11-203ENST00000530304 LINC00158P58513 81 aa13.63□□□□□ -0.23
PCF11-203ENST00000530304 FAM222AQ5U5X8 452 aa13.62□□□□□ -0.23
PCF11-203ENST00000530304 C22orf24Q9Y442 160 aa13.62□□□□□ -0.23
PCF11-203ENST00000530304 B5MCH6 92 aa13.61□□□□□ -0.23
PCF11-203ENST00000530304 ACYP1P07311 99 aa13.61□□□□□ -0.23
PCF11-203ENST00000530304 A0A087WZ39 114 aa13.61□□□□□ -0.23
PCF11-203ENST00000530304 C5orf38Q86SI9 138 aa13.61□□□□□ -0.23
PCF11-203ENST00000530304 DEFB130BP0DP73 79 aa13.6□□□□□ -0.23
PCF11-203ENST00000530304 DEFB130AP0DP74 79 aa13.6□□□□□ -0.23
PCF11-203ENST00000530304 ANK3Q12955 4377 aaKnown RBP13.6□□□□□ -0.23
PCF11-203ENST00000530304 Q9HAA7 133 aa13.6□□□□□ -0.23
PCF11-203ENST00000530304 CCL18P55774 89 aa13.59□□□□□ -0.23
PCF11-203ENST00000530304 IBA57-AS1B1ANH7 110 aa13.58□□□□□ -0.24
PCF11-203ENST00000530304 ACANP16112 2415 aa13.58□□□□□ -0.24
PCF11-203ENST00000530304 LINC00959A0A1B0GUT2 108 aa13.58□□□□□ -0.24
PCF11-203ENST00000530304 SMIM11BQ8TCY0 68 aa13.58□□□□□ -0.24
PCF11-203ENST00000530304 TRBV7-7A0A0K0K1E9 115 aa13.57□□□□□ -0.24
PCF11-203ENST00000530304 PFN2P35080 140 aa13.57□□□□□ -0.24
PCF11-203ENST00000530304 CCDC179H3BU77 68 aa13.56□□□□□ -0.24
PCF11-203ENST00000530304 PDZD2O15018 2839 aa13.56□□□□□ -0.24
PCF11-203ENST00000530304 KIR2DL5BQ8NHK3 375 aa13.55□□□□□ -0.24
PCF11-203ENST00000530304 SMCR5Q8TEV8 140 aa13.55□□□□□ -0.24
PCF11-203ENST00000530304 MTORP42345 2549 aa13.55□□□□□ -0.24
PCF11-203ENST00000530304 MALP21145 153 aa13.55□□□□□ -0.24
PCF11-203ENST00000530304 GYPEP15421 78 aa13.54□□□□□ -0.24
PCF11-203ENST00000530304 A0A087WYN8 130 aa13.54□□□□□ -0.24
PCF11-203ENST00000530304 C6orf226Q5I0X4 101 aa13.53□□□□□ -0.24
PCF11-203ENST00000530304 LINC00612Q8N6U2 182 aa13.53□□□□□ -0.24
PCF11-203ENST00000530304 C11orf68Q9H3H3 251 aaKnown RBP13.53□□□□□ -0.24
PCF11-203ENST00000530304 TENM4Q6N022 2769 aa13.52□□□□□ -0.24
PCF11-203ENST00000530304 XCL1P47992 114 aa13.52□□□□□ -0.24
PCF11-203ENST00000530304 HILS1P60008 231 aa13.52□□□□□ -0.24
PCF11-203ENST00000530304 PAX4O43316 350 aa13.52□□□□□ -0.25
PCF11-203ENST00000530304 DNAL4O96015 105 aa13.51□□□□□ -0.25
PCF11-203ENST00000530304 INAFM2P0DMQ5 153 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 149.8 ms