RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 HSPB8Q9UJY1 196 aa9.08□□□□□ -0.96
CD44-224ENST00000526669 SNRPEP62304 92 aaKnown RBP9.07□□□□□ -0.96
CD44-224ENST00000526669 CD164L2Q6UWJ8 174 aa9.07□□□□□ -0.96
CD44-224ENST00000526669 HIST3H2BBQ8N257 126 aa9.07□□□□□ -0.96
CD44-224ENST00000526669 DNAH5Q8TE73 4624 aa9.07□□□□□ -0.96
CD44-224ENST00000526669 LRCOL1A6NCL2 159 aa9.06□□□□□ -0.96
CD44-224ENST00000526669 A0A087WTM6 91 aa9.05□□□□□ -0.96
CD44-224ENST00000526669 USP17L23D6RBM5 183 aa9.05□□□□□ -0.96
CD44-224ENST00000526669 GEMIN7Q9H840 131 aaKnown RBP9.05□□□□□ -0.96
CD44-224ENST00000526669 CHTOPQ9Y3Y2 248 aaKnown RBP9.05□□□□□ -0.96
CD44-224ENST00000526669 IGLV4-69A0A075B6H9 119 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 COX7A2LO14548 114 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 S100A2P29034 98 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 FUSP35637 526 aaKnown RBP eCLIP9.04□□□□□ -0.96
CD44-224ENST00000526669 LINC00336Q6ZUF6 198 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 CHAC1Q9BUX1 264 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 MAP1LC3CQ9BXW4 147 aa9.04□□□□□ -0.96
CD44-224ENST00000526669 TRAV12-1A0A0B4J245 112 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 IGHV3OR16-9A0A0B4J2B5 98 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 TINCRA0A1B0GVN0 87 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 IGLC3P0DOY3 106 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 MALP21145 153 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 HERVK_113P63121 156 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 HIGD2BQ4VC39 106 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 FAM19A3Q7Z5A8 133 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 SPATA12Q7Z6I5 190 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 LINC00469Q8N7U9 141 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 C15orf56Q8N910 161 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 PMCHL2Q9BQD1 86 aa9.03□□□□□ -0.96
CD44-224ENST00000526669 MRPL35Q9NZE8 188 aaKnown RBP9.03□□□□□ -0.96
CD44-224ENST00000526669 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.02□□□□□ -0.97
CD44-224ENST00000526669 C5orf52A6NGY3 159 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 C11orf86A6NJI1 115 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 C3orf79P0CE67 100 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 KRTDAPP60985 99 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 ODF1Q14990 250 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 PACRGQ96M98 296 aaPredicted RBP9.02□□□□□ -0.97
CD44-224ENST00000526669 HIST1H2BLQ99880 126 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 CDKN2A-AS1Q9UH64 79 aa9.02□□□□□ -0.97
CD44-224ENST00000526669 F8VRH5 84 aa9.01□□□□□ -0.97
CD44-224ENST00000526669 EREGO14944 169 aa9.01□□□□□ -0.97
CD44-224ENST00000526669 SEC11AP67812 179 aa9.01□□□□□ -0.97
CD44-224ENST00000526669 LINC00526Q96FQ7 95 aa9.01□□□□□ -0.97
CD44-224ENST00000526669 A0A087WZ39 114 aa9□□□□□ -0.97
CD44-224ENST00000526669 IGHV1-58A0A0C4DH39 117 aa9□□□□□ -0.97
CD44-224ENST00000526669 hDV102S1A0JD36 115 aa9□□□□□ -0.97
CD44-224ENST00000526669 SYS1-DBNDD2H3BUS1 97 aa9□□□□□ -0.97
CD44-224ENST00000526669 SPINK8P0C7L1 97 aa9□□□□□ -0.97
CD44-224ENST00000526669 ZNF22P17026 224 aaPredicted RBP9□□□□□ -0.97
CD44-224ENST00000526669 Q8N814 137 aa9□□□□□ -0.97
CD44-224ENST00000526669 ORAOV1Q8WV07 137 aa9□□□□□ -0.97
CD44-224ENST00000526669 DYNC1H1Q14204 4646 aaKnown RBP9□□□□□ -0.97
CD44-224ENST00000526669 TMEM170BQ5T4T1 132 aa8.99□□□□□ -0.97
CD44-224ENST00000526669 CFAP161Q6P656 301 aa8.99□□□□□ -0.97
CD44-224ENST00000526669 PKHD1P08F94 4074 aa8.99□□□□□ -0.97
CD44-224ENST00000526669 IGLV5-45A0A087WSX0 123 aa8.98□□□□□ -0.97
CD44-224ENST00000526669 A0A1B0GVY2 172 aa8.98□□□□□ -0.97
CD44-224ENST00000526669 APOMO95445 188 aa8.98□□□□□ -0.97
CD44-224ENST00000526669 KRTAP10-2P60368 255 aa8.98□□□□□ -0.97
CD44-224ENST00000526669 C14orf177Q52M58 125 aa8.98□□□□□ -0.97
CD44-224ENST00000526669 IGHV3-64A0A075B6Q5 118 aa8.97□□□□□ -0.97
CD44-224ENST00000526669 SPAG11BQ08648 103 aa8.97□□□□□ -0.97
CD44-224ENST00000526669 PET117Q6UWS5 81 aa8.97□□□□□ -0.97
CD44-224ENST00000526669 TOMM7Q9P0U1 55 aa8.97□□□□□ -0.97
CD44-224ENST00000526669 DNAH8Q96JB1 4490 aa8.97□□□□□ -0.97
CD44-224ENST00000526669 GVQW2A0A096LPI5 108 aaPredicted RBP8.96□□□□□ -0.98
CD44-224ENST00000526669 SMIM1B2RUZ4 78 aa8.96□□□□□ -0.98
CD44-224ENST00000526669 H3BRM9 83 aa8.96□□□□□ -0.98
CD44-224ENST00000526669 ZNF561-AS1K7EIQ3 104 aa8.96□□□□□ -0.98
CD44-224ENST00000526669 DPM2O94777 84 aa8.96□□□□□ -0.98
CD44-224ENST00000526669 LINC01545Q5VT33 79 aa8.96□□□□□ -0.98
CD44-224ENST00000526669 IGKCP01834 107 aa8.95□□□□□ -0.98
CD44-224ENST00000526669 LINC01561Q8N1V8 128 aa8.95□□□□□ -0.98
CD44-224ENST00000526669 OR10D4PQ8NGN7 298 aa8.95□□□□□ -0.98
CD44-224ENST00000526669 NTN5Q8WTR8 489 aaPredicted RBP8.95□□□□□ -0.98
CD44-224ENST00000526669 SLPIP03973 132 aa8.94□□□□□ -0.98
CD44-224ENST00000526669 IGLV5-52A0A0A0MRZ9 124 aa8.93□□□□□ -0.98
CD44-224ENST00000526669 PLNP26678 52 aa8.93□□□□□ -0.98
CD44-224ENST00000526669 LINC01620Q4KN68 170 aa8.93□□□□□ -0.98
CD44-224ENST00000526669 LRP1BQ9NZR2 4599 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 TMEM223A0PJW6 202 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 C20orf202A1L168 122 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 PRSS2P07478 247 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 KIAA0087Q14695 138 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 ATOH7Q8N100 152 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 COX7B2Q8TF08 81 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 CAMK2N2Q96S95 79 aa8.92□□□□□ -0.98
CD44-224ENST00000526669 C2orf82Q6UX34 121 aa8.91□□□□□ -0.98
CD44-224ENST00000526669 Q6ZRU5 148 aa8.91□□□□□ -0.98
CD44-224ENST00000526669 IGLV5-39A0A0G2JS06 123 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 SYCNQ0VAF6 134 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 C6orf226Q5I0X4 101 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 C10orf25Q5T742 122 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 Q8IZM0 81 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 CARD19Q96LW7 228 aa8.9□□□□□ -0.98
CD44-224ENST00000526669 EPPK1P58107 5090 aaKnown RBP8.89□□□□□ -0.99
CD44-224ENST00000526669 NDUFA1O15239 70 aa8.89□□□□□ -0.99
CD44-224ENST00000526669 CNBPP62633 177 aaKnown RBP8.89□□□□□ -0.99
CD44-224ENST00000526669 UNQ6190/PRO20217Q6UXQ8 127 aa8.89□□□□□ -0.99
CD44-224ENST00000526669 C2orf48Q96LS8 159 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 174.1 ms