RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RNASEKQ6P5S7 137 aaKnown RBP2.25□□□□□ -2.05
NUP54-212ENST00000513248 C9orf62Q8N4C0 152 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 DEFB104AQ8WTQ1 72 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 SMIM7Q9BQ49 75 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 TMEM243Q9BU79 118 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 RNASE7Q9H1E1 156 aaKnown RBP2.25□□□□□ -2.05
NUP54-212ENST00000513248 NIT2Q9NQR4 276 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 STARD9Q9P2P6 4700 aa2.25□□□□□ -2.05
NUP54-212ENST00000513248 ALMS1Q8TCU4 4167 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 IGLV10-54A0A075B6I4 117 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 C19orf71A6NCJ1 209 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 LRCOL1A6NCL2 159 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 TMEM250H0YL14 139 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 M0QY20 66 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 APCSP02743 223 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 IGLC6P0CF74 106 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 LINC00694P0DN24 101 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 RBX1P62877 108 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 PEA15Q15121 130 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 MIAQ16674 131 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 MPV17L2Q567V2 206 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 Q5VSD8 79 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 LINC00269Q8N2A0 174 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 BTF3L4Q96K17 158 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 TMEM70Q9BUB7 260 aa2.24□□□□□ -2.05
NUP54-212ENST00000513248 SRRM2Q9UQ35 2752 aaKnown RBP2.24□□□□□ -2.05
NUP54-212ENST00000513248 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.23□□□□□ -2.05
NUP54-212ENST00000513248 TRAV26-2A0A0B4J265 109 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 A0A1B0GUT8 65 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 IGLV2-8P01709 118 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 FCER1GP30273 86 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 RAB14P61106 215 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 REG3AQ06141 175 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 SMAGPQ0VAQ4 97 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 WFDC2Q14508 124 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 ADIRFQ15847 76 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 IQCJQ1A5X6 159 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 TMEM241Q24JQ0 296 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 TEX261Q6UWH6 196 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 ENHOQ6UWT2 76 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 NTM-AS1Q6ZSK4 140 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 FAM210AQ96ND0 272 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 LCE3DQ9BYE3 92 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 ST20Q9HBF5 79 aa2.23□□□□□ -2.05
NUP54-212ENST00000513248 TRBV20OR9-2A0A075B6H5 130 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.22□□□□□ -2.05
NUP54-212ENST00000513248 TRAV8-4A0A0B4J246 113 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 IGKV2-29A2NJV5 120 aaPredicted RBP2.22□□□□□ -2.05
NUP54-212ENST00000513248 SDHAF1A6NFY7 115 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 HIGD1CA8MV81 97 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 I3L3M4 83 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 K7EN84 100 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 NCR2O95944 276 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 SRP19P09132 144 aaKnown RBP2.22□□□□□ -2.05
NUP54-212ENST00000513248 CHTF8P0CG12 524 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 RPS10P46783 165 aaKnown RBP2.22□□□□□ -2.05
NUP54-212ENST00000513248 SS18Q15532 418 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 FAM231DQ6ZW35 169 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 GATD1Q8NB37 220 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 OR5A1Q8NGJ0 315 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 TSKUQ8WUA8 353 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 RPL39LQ96EH5 51 aaKnown RBP2.22□□□□□ -2.05
NUP54-212ENST00000513248 MRAP2Q96G30 205 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 HIST1H4GQ99525 98 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 OSTCQ9NRP0 149 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 NAT8Q9UHE5 227 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 NAT8BQ9UHF3 227 aa2.22□□□□□ -2.05
NUP54-212ENST00000513248 IGLV4-60A0A075B6I1 120 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 IGHV3-64A0A075B6Q5 118 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 A0A1B0GVG6 124 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 F8W036 122 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 SMKR1H3BMG3 65 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 PPP1R17O96001 155 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 S100A8P05109 93 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 FGF6P10767 208 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 ZNF25P17030 456 aaPredicted RBP2.21□□□□□ -2.06
NUP54-212ENST00000513248 XCL1P47992 114 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 FOXA3P55318 350 aaPredicted RBP2.21□□□□□ -2.06
NUP54-212ENST00000513248 RPL37AP61513 92 aaKnown RBP2.21□□□□□ -2.06
NUP54-212ENST00000513248 SCXQ7RTU7 201 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 LINC01551Q86U37 167 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 AMN1Q8IY45 258 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 RNF185Q96GF1 192 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 TMEM242Q9NWH2 141 aa2.21□□□□□ -2.06
NUP54-212ENST00000513248 DYNC1H1Q14204 4646 aaKnown RBP2.2□□□□□ -2.06
NUP54-212ENST00000513248 KMT2AQ03164 3969 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 A0A1B0GW15 77 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 C7orf77A4D0Y5 90 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 PPP1R2P9O14990 202 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 RAB4AP20338 218 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 RAB5AP20339 215 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 CKS2P33552 79 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 RPL23P62829 140 aaKnown RBP2.2□□□□□ -2.06
NUP54-212ENST00000513248 MRPL54Q6P161 138 aaKnown RBP2.2□□□□□ -2.06
NUP54-212ENST00000513248 NUP35Q8NFH5 326 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 LYPD6BQ8NI32 183 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 ISOC2Q96AB3 205 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 CHAC1Q9BUX1 264 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 CNFNQ9BYD5 112 aa2.2□□□□□ -2.06
NUP54-212ENST00000513248 TMEM191AQ9H0A3 160 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms