RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 IFI27L1Q96BM0 104 aa19.49■□□□□ 0.71
LIMCH1-211ENST00000509638 COX7A2LO14548 114 aa19.48■□□□□ 0.71
LIMCH1-211ENST00000509638 IGHV3OR16-9A0A0B4J2B5 98 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 FABP4P15090 132 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 COX6A2Q02221 97 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 FAM19A3Q7Z5A8 133 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 C5orf38Q86SI9 138 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 C15orf56Q8N910 161 aa19.46■□□□□ 0.71
LIMCH1-211ENST00000509638 A0A0J9YXV3 536 aa19.45■□□□□ 0.7
LIMCH1-211ENST00000509638 HSPB8Q9UJY1 196 aa19.45■□□□□ 0.7
LIMCH1-211ENST00000509638 PRSS1P07477 247 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 C14orf177Q52M58 125 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 SPATA12Q7Z6I5 190 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 MALP21145 153 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 KRTAP10-2P60368 255 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 SEC11AP67812 179 aa19.44■□□□□ 0.7
LIMCH1-211ENST00000509638 IGLV2-33A0A075B6J2 118 aaPredicted RBP19.43■□□□□ 0.7
LIMCH1-211ENST00000509638 GEMIN7Q9H840 131 aaKnown RBP19.43■□□□□ 0.7
LIMCH1-211ENST00000509638 HERVK_113P63121 156 aa19.42■□□□□ 0.7
LIMCH1-211ENST00000509638 CFAP161Q6P656 301 aa19.42■□□□□ 0.7
LIMCH1-211ENST00000509638 EPPK1P58107 5090 aaKnown RBP19.42■□□□□ 0.7
LIMCH1-211ENST00000509638 FUSP35637 526 aaKnown RBP eCLIP19.41■□□□□ 0.7
LIMCH1-211ENST00000509638 IGHV1-58A0A0C4DH39 117 aa19.4■□□□□ 0.7
LIMCH1-211ENST00000509638 TINCRA0A1B0GVN0 87 aa19.4■□□□□ 0.7
LIMCH1-211ENST00000509638 hDV102S1A0JD36 115 aa19.4■□□□□ 0.7
LIMCH1-211ENST00000509638 H0Y8G0 127 aa19.4■□□□□ 0.7
LIMCH1-211ENST00000509638 HIGD2BQ4VC39 106 aa19.4■□□□□ 0.7
LIMCH1-211ENST00000509638 A0A087WZ39 114 aa19.39■□□□□ 0.69
LIMCH1-211ENST00000509638 TRAV12-1A0A0B4J245 112 aa19.38■□□□□ 0.69
LIMCH1-211ENST00000509638 CHAC1Q9BUX1 264 aa19.38■□□□□ 0.69
LIMCH1-211ENST00000509638 IGLV4-69A0A075B6H9 119 aa19.37■□□□□ 0.69
LIMCH1-211ENST00000509638 GVQW2A0A096LPI5 108 aaPredicted RBP19.37■□□□□ 0.69
LIMCH1-211ENST00000509638 LINC00469Q8N7U9 141 aa19.37■□□□□ 0.69
LIMCH1-211ENST00000509638 CDKN2A-AS1Q9UH64 79 aa19.37■□□□□ 0.69
LIMCH1-211ENST00000509638 IGLC3P0DOY3 106 aa19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 NTN5Q8WTR8 489 aaPredicted RBP19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 DNAH5Q8TE73 4624 aa19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 APOMO95445 188 aa19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 S100A6P06703 90 aa19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 PACRGQ96M98 296 aaPredicted RBP19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 CHTOPQ9Y3Y2 248 aaKnown RBP19.36■□□□□ 0.69
LIMCH1-211ENST00000509638 IGLV5-45A0A087WSX0 123 aa19.34■□□□□ 0.69
LIMCH1-211ENST00000509638 IGLV5-52A0A0A0MRZ9 124 aa19.33■□□□□ 0.69
LIMCH1-211ENST00000509638 CDPF1Q6NVV7 123 aa19.33■□□□□ 0.69
LIMCH1-211ENST00000509638 ORAOV1Q8WV07 137 aa19.32■□□□□ 0.68
LIMCH1-211ENST00000509638 MAP1LC3CQ9BXW4 147 aa19.32■□□□□ 0.68
LIMCH1-211ENST00000509638 PGPEP1Q9NXJ5 209 aa19.32■□□□□ 0.68
LIMCH1-211ENST00000509638 IGHV3-64A0A075B6Q5 118 aa19.32■□□□□ 0.68
LIMCH1-211ENST00000509638 MRPL35Q9NZE8 188 aaKnown RBP19.32■□□□□ 0.68
LIMCH1-211ENST00000509638 C11orf86A6NJI1 115 aa19.31■□□□□ 0.68
LIMCH1-211ENST00000509638 F8VRH5 84 aa19.31■□□□□ 0.68
LIMCH1-211ENST00000509638 ODF1Q14990 250 aa19.31■□□□□ 0.68
LIMCH1-211ENST00000509638 LINC00526Q96FQ7 95 aa19.31■□□□□ 0.68
LIMCH1-211ENST00000509638 SPAG11BQ08648 103 aa19.3■□□□□ 0.68
LIMCH1-211ENST00000509638 LINC01561Q8N1V8 128 aa19.3■□□□□ 0.68
LIMCH1-211ENST00000509638 HIST3H2BBQ8N257 126 aa19.3■□□□□ 0.68
LIMCH1-211ENST00000509638 OR10D4PQ8NGN7 298 aa19.3■□□□□ 0.68
LIMCH1-211ENST00000509638 ZNF561-AS1K7EIQ3 104 aa19.29■□□□□ 0.68
LIMCH1-211ENST00000509638 ZNF22P17026 224 aaPredicted RBP19.28■□□□□ 0.68
LIMCH1-211ENST00000509638 C16orf90A8MZG2 172 aa19.27■□□□□ 0.68
LIMCH1-211ENST00000509638 CNBPP62633 177 aaKnown RBP19.27■□□□□ 0.67
LIMCH1-211ENST00000509638 SMIM1B2RUZ4 78 aa19.26■□□□□ 0.67
LIMCH1-211ENST00000509638 SLPIP03973 132 aa19.26■□□□□ 0.67
LIMCH1-211ENST00000509638 H3BRM9 83 aa19.25■□□□□ 0.67
LIMCH1-211ENST00000509638 SYS1-DBNDD2H3BUS1 97 aa19.25■□□□□ 0.67
LIMCH1-211ENST00000509638 S100A2P29034 98 aa19.25■□□□□ 0.67
LIMCH1-211ENST00000509638 SPINK8P0C7L1 97 aa19.24■□□□□ 0.67
LIMCH1-211ENST00000509638 SNRPEP62304 92 aaKnown RBP19.24■□□□□ 0.67
LIMCH1-211ENST00000509638 TMEM170BQ5T4T1 132 aa19.23■□□□□ 0.67
LIMCH1-211ENST00000509638 PMCHL2Q9BQD1 86 aa19.23■□□□□ 0.67
LIMCH1-211ENST00000509638 LINC01620Q4KN68 170 aa19.22■□□□□ 0.67
LIMCH1-211ENST00000509638 HIST1H2BLQ99880 126 aa19.22■□□□□ 0.67
LIMCH1-211ENST00000509638 TRAV16A0A0A6YYK6 109 aaPredicted RBP19.21■□□□□ 0.67
LIMCH1-211ENST00000509638 C3orf79P0CE67 100 aa19.21■□□□□ 0.67
LIMCH1-211ENST00000509638 KRTDAPP60985 99 aa19.21■□□□□ 0.67
LIMCH1-211ENST00000509638 TOMM7Q9P0U1 55 aa19.21■□□□□ 0.67
LIMCH1-211ENST00000509638 PLNP26678 52 aa19.2■□□□□ 0.66
LIMCH1-211ENST00000509638 DYNC1H1Q14204 4646 aaKnown RBP19.2■□□□□ 0.66
LIMCH1-211ENST00000509638 C5orf52A6NGY3 159 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 GCSHP23434 173 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 KIAA0087Q14695 138 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 CAMK2N2Q96S95 79 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 C2orf48Q96LS8 159 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 CARD19Q96LW7 228 aa19.19■□□□□ 0.66
LIMCH1-211ENST00000509638 DPM2O94777 84 aa19.18■□□□□ 0.66
LIMCH1-211ENST00000509638 PRSS2P07478 247 aa19.18■□□□□ 0.66
LIMCH1-211ENST00000509638 TMA7Q9Y2S6 64 aaKnown RBP19.18■□□□□ 0.66
LIMCH1-211ENST00000509638 LRP1BQ9NZR2 4599 aa19.17■□□□□ 0.66
LIMCH1-211ENST00000509638 SYCNQ0VAF6 134 aa19.17■□□□□ 0.66
LIMCH1-211ENST00000509638 PET117Q6UWS5 81 aa19.17■□□□□ 0.66
LIMCH1-211ENST00000509638 Q8IZM0 81 aa19.17■□□□□ 0.66
LIMCH1-211ENST00000509638 C9orf163Q8N9P6 203 aa19.16■□□□□ 0.66
LIMCH1-211ENST00000509638 LINC01545Q5VT33 79 aa19.15■□□□□ 0.66
LIMCH1-211ENST00000509638 Q6ZRU5 148 aa19.15■□□□□ 0.66
LIMCH1-211ENST00000509638 IGKCP01834 107 aa19.15■□□□□ 0.66
LIMCH1-211ENST00000509638 KRTAP10-1P60331 282 aa19.15■□□□□ 0.66
LIMCH1-211ENST00000509638 IGLV5-39A0A0G2JS06 123 aa19.14■□□□□ 0.65
LIMCH1-211ENST00000509638 COX7B2Q8TF08 81 aa19.14■□□□□ 0.65
LIMCH1-211ENST00000509638 NDUFA1O15239 70 aa19.13■□□□□ 0.65
LIMCH1-211ENST00000509638 TMEM223A0PJW6 202 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 151.8 ms