RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 XCL2Q9UBD3 114 aa5.25□□□□□ -1.57
LIMCH1-207ENST00000508466 TRAV10A0A0B4J240 114 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 LYPD5Q6UWN5 251 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 TMEM86BQ8N661 226 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 IGHV1OR15-1A0A075B7D0 117 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 A0A087WZ39 114 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 A8MTW9 85 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 HAMPP81172 84 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 MRPS36P82909 103 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 SMIM11BQ8TCY0 68 aa5.24□□□□□ -1.57
LIMCH1-207ENST00000508466 IGHV1-69P01742 117 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 LINC00158P58513 81 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 DAD1P61803 113 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 GCN1Q92616 2671 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 MXRA5Q9NR99 2828 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 F8WEM9 126 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 M0R2N4 97 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 FAM229BQ4G0N7 80 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 C10orf99Q6UWK7 81 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 KAAG1Q9UBP8 84 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 UBE2D4Q9Y2X8 147 aa5.23□□□□□ -1.57
LIMCH1-207ENST00000508466 INAFM2P0DMQ5 153 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 PLA2G2CQ5R387 149 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 C11orf72Q8NBR9 251 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 PAX4O43316 350 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 C1orf195Q5TG92 126 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 A0A0J9YX75 114 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 SAA4P35542 130 aa5.22□□□□□ -1.57
LIMCH1-207ENST00000508466 BLCAPP62952 87 aa5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 V9GYY9 64 aa5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 FAM110DQ8TAY7 271 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 C9orf85Q96MD7 179 aa5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 RNF5Q99942 180 aa5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 SND1-IT1Q9HBX3 110 aa5.21□□□□□ -1.58
LIMCH1-207ENST00000508466 IGKV2-28A0A075B6P5 120 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 SOCS3O14543 225 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 IGKV2D-28P01615 120 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 CRPP02741 224 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 NBL1P41271 181 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 KHDC1LQ5JSQ8 128 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 HIST2H2BCQ6DN03 193 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 Q96MF0 132 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 LINC01600Q96MT4 127 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 CCDC168Q8NDH2 2452 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 MYO18BQ8IUG5 2567 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 LINC00242Q5T6M2 205 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 MINOS1Q5TGZ0 78 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 SPATA3Q8NHX4 192 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 CHCHD7Q9BUK0 85 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 H7BZZ5 65 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 TIMM17BO60830 172 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 C16orf95Q9H693 158 aa5.2□□□□□ -1.58
LIMCH1-207ENST00000508466 COL27A1Q8IZC6 1860 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-207ENST00000508466 Q8N9L7 120 aa5.19□□□□□ -1.58
LIMCH1-207ENST00000508466 SPTBN4Q9H254 2564 aa5.19□□□□□ -1.58
LIMCH1-207ENST00000508466 NDUFA1O15239 70 aa5.19□□□□□ -1.58
LIMCH1-207ENST00000508466 U3KQE9 123 aa5.19□□□□□ -1.58
LIMCH1-207ENST00000508466 ZNF292O60281 2723 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 PSMB8P28062 276 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 DEFB124Q8NES8 71 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 LRRK2Q5S007 2527 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 HIVEP3Q5T1R4 2406 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 TRBV7-6A0A0J9YX20 115 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 TRBV6-5A0A0K0K1A5 114 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 KLLNB2CW77 178 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 Q6JHZ5 121 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 ZNF462Q96JM2 2506 aa5.18□□□□□ -1.58
LIMCH1-207ENST00000508466 SMIM1B2RUZ4 78 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 F8WDY8 70 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 Q8N6K4 173 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 TM2D3Q9BRN9 247 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 K7ENP7 123 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 PLA2G2AP14555 144 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 NANOS2P60321 138 aaKnown RBP5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 PRR4Q16378 134 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 CLPSL2Q6UWE3 100 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 UBE2E2Q96LR5 201 aa5.17□□□□□ -1.58
LIMCH1-207ENST00000508466 ACACBO00763 2458 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 A8MU10 97 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 ODF3BA8MYP8 253 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 CCL18P55774 89 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 MRPL53Q96EL3 112 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 ABCA2Q9BZC7 2435 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 CCKP06307 115 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 ZNF843Q8N446 348 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 LENEPQ9Y5L5 61 aa5.16□□□□□ -1.58
LIMCH1-207ENST00000508466 SIRPDQ9H106 197 aa5.15□□□□□ -1.58
LIMCH1-207ENST00000508466 RETNQ9HD89 108 aa5.15□□□□□ -1.58
LIMCH1-207ENST00000508466 SETXQ7Z333 2677 aaKnown RBP5.15□□□□□ -1.58
LIMCH1-207ENST00000508466 A0A1W2PRX2 142 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 C19orf54Q5BKX5 351 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 APRG1Q8IVJ8 170 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 C4orf48Q5BLP8 95 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 COX7B2Q8TF08 81 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 SERP1Q9Y6X1 66 aa5.15□□□□□ -1.59
LIMCH1-207ENST00000508466 PSPHP1O15172 72 aa5.14□□□□□ -1.59
LIMCH1-207ENST00000508466 SNRPD3P62318 126 aaKnown RBP5.14□□□□□ -1.59
LIMCH1-207ENST00000508466 ORMDL1Q9P0S3 153 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms