RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CDC42SE2Q9NRR3 84 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 PCP4P48539 62 aa8.51□□□□□ -1.05
NUP54-202ENST00000502850 LINC00242Q5T6M2 205 aa8.51□□□□□ -1.05
NUP54-202ENST00000502850 NTM-AS1Q6ZSK4 140 aa8.51□□□□□ -1.05
NUP54-202ENST00000502850 Q1RN00 199 aa8.51□□□□□ -1.05
NUP54-202ENST00000502850 M0QXV9 152 aa8.5□□□□□ -1.05
NUP54-202ENST00000502850 PRSS2P07478 247 aa8.5□□□□□ -1.05
NUP54-202ENST00000502850 LINC00694P0DN24 101 aa8.5□□□□□ -1.05
NUP54-202ENST00000502850 HERV-K104P63124 156 aa8.5□□□□□ -1.05
NUP54-202ENST00000502850 ETDBQ3ZM63 59 aa8.49□□□□□ -1.05
NUP54-202ENST00000502850 LINC00612Q8N6U2 182 aa8.49□□□□□ -1.05
NUP54-202ENST00000502850 PPDPFQ9H3Y8 114 aa8.49□□□□□ -1.05
NUP54-202ENST00000502850 TRAV13-1A0A0B4J241 112 aa8.48□□□□□ -1.05
NUP54-202ENST00000502850 TRBV30A0A0K0K1B3 111 aa8.48□□□□□ -1.05
NUP54-202ENST00000502850 SMIM1B2RUZ4 78 aa8.48□□□□□ -1.05
NUP54-202ENST00000502850 TCL1BO95988 128 aa8.48□□□□□ -1.05
NUP54-202ENST00000502850 FHL2Q14192 279 aa8.48□□□□□ -1.05
NUP54-202ENST00000502850 TRBV6-8A0A0A6YYG3 113 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 COX6CP09669 75 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 KRTAP10-3P60369 221 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 ATXN8Q156A1 80 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 COX6A2Q02221 97 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 SFTA2Q6UW10 78 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 Q9H8V8 135 aa8.47□□□□□ -1.05
NUP54-202ENST00000502850 LYRM9A8MSI8 78 aa8.46□□□□□ -1.06
NUP54-202ENST00000502850 APOC4P55056 127 aa8.46□□□□□ -1.06
NUP54-202ENST00000502850 ADAMTSL4-AS1Q5T5F5 129 aa8.46□□□□□ -1.06
NUP54-202ENST00000502850 TEN1Q86WV5 123 aa8.46□□□□□ -1.06
NUP54-202ENST00000502850 C3orf56Q8N813 242 aa8.46□□□□□ -1.06
NUP54-202ENST00000502850 A8MZ25 164 aa8.45□□□□□ -1.06
NUP54-202ENST00000502850 SH2D6Q7Z4S9 175 aa8.45□□□□□ -1.06
NUP54-202ENST00000502850 PPDPFLQ8WWR9 84 aa8.45□□□□□ -1.06
NUP54-202ENST00000502850 F5H768 121 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 H7C2G1 150 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 EIF4EBP3O60516 100 aaPredicted RBP8.44□□□□□ -1.06
NUP54-202ENST00000502850 FOXI1Q12951 378 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 MTURNQ8N3F0 131 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 CHCHD5Q9BSY4 110 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 ICOSQ9Y6W8 199 aa8.44□□□□□ -1.06
NUP54-202ENST00000502850 LOC100131303A0A0U1RQF7 123 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 SMCPP49901 116 aaPredicted RBP8.43□□□□□ -1.06
NUP54-202ENST00000502850 MEIG1Q5JSS6 88 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 ZNF625Q96I27 306 aaPredicted RBP8.43□□□□□ -1.06
NUP54-202ENST00000502850 SLC25A20O43772 301 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 DEFB130BP0DP73 79 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 DEFB130AP0DP74 79 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 GAGE6Q13070 117 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 LINC00308Q8TCZ7 52 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 SPATA25Q9BR10 227 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 PRO0255Q9UI72 69 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 X6R8D5 127 aa8.43□□□□□ -1.06
NUP54-202ENST00000502850 TRIAP1O43715 76 aa8.42□□□□□ -1.06
NUP54-202ENST00000502850 LINC01600Q96MT4 127 aa8.42□□□□□ -1.06
NUP54-202ENST00000502850 GAGE12HA6NDE8 117 aa8.41□□□□□ -1.06
NUP54-202ENST00000502850 GYPEP15421 78 aa8.41□□□□□ -1.06
NUP54-202ENST00000502850 RPL13AP40429 203 aaKnown RBP8.41□□□□□ -1.06
NUP54-202ENST00000502850 COX7B2Q8TF08 81 aa8.41□□□□□ -1.06
NUP54-202ENST00000502850 TENM1Q9UKZ4 2725 aa8.41□□□□□ -1.06
NUP54-202ENST00000502850 C9JAW5 83 aa8.4□□□□□ -1.06
NUP54-202ENST00000502850 SCGB1A1P11684 91 aa8.4□□□□□ -1.06
NUP54-202ENST00000502850 LINC01620Q4KN68 170 aa8.4□□□□□ -1.06
NUP54-202ENST00000502850 NBEAL1Q6ZS30 2694 aa8.4□□□□□ -1.06
NUP54-202ENST00000502850 SIGMAR1Q99720 223 aa8.4□□□□□ -1.06
NUP54-202ENST00000502850 A0A1B0GUV1 79 aa8.4□□□□□ -1.07
NUP54-202ENST00000502850 NPC2P61916 151 aa8.4□□□□□ -1.07
NUP54-202ENST00000502850 CITED1Q99966 193 aa8.4□□□□□ -1.07
NUP54-202ENST00000502850 TRBV10-2A0A0K0K1G8 114 aa8.39□□□□□ -1.07
NUP54-202ENST00000502850 H3BT86 120 aa8.39□□□□□ -1.07
NUP54-202ENST00000502850 FAM222AQ5U5X8 452 aa8.39□□□□□ -1.07
NUP54-202ENST00000502850 LINC01561Q8N1V8 128 aa8.39□□□□□ -1.07
NUP54-202ENST00000502850 ANKRD29Q8N6D5 301 aa8.39□□□□□ -1.07
NUP54-202ENST00000502850 A0A087WZ39 114 aa8.38□□□□□ -1.07
NUP54-202ENST00000502850 IGHV3OR16-9A0A0B4J2B5 98 aa8.38□□□□□ -1.07
NUP54-202ENST00000502850 MIFP14174 115 aa8.38□□□□□ -1.07
NUP54-202ENST00000502850 SS18Q15532 418 aa8.38□□□□□ -1.07
NUP54-202ENST00000502850 C21orf62-AS1Q17RA5 79 aa8.38□□□□□ -1.07
NUP54-202ENST00000502850 IGLV4-60A0A075B6I1 120 aa8.37□□□□□ -1.07
NUP54-202ENST00000502850 TMEM262E9PQX1 116 aa8.37□□□□□ -1.07
NUP54-202ENST00000502850 PAX4O43316 350 aa8.37□□□□□ -1.07
NUP54-202ENST00000502850 SHISA2Q6UWI4 295 aa8.37□□□□□ -1.07
NUP54-202ENST00000502850 DAND5Q8N907 189 aa8.37□□□□□ -1.07
NUP54-202ENST00000502850 TRAV26-1A0A087WT03 109 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 LST1O00453 97 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 WIPF1O43516 503 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 TRAV13-2A0A0B4J235 113 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 LINC00959A0A1B0GUT2 108 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 IBA57-AS1B1ANH7 110 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 DAD1P61803 113 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 NOTCH3Q9UM47 2321 aa8.36□□□□□ -1.07
NUP54-202ENST00000502850 IGKV3OR2-268A0A0C4DH90 116 aa8.35□□□□□ -1.07
NUP54-202ENST00000502850 DEFB135Q30KP9 77 aa8.35□□□□□ -1.07
NUP54-202ENST00000502850 WFDC9Q8NEX5 89 aa8.35□□□□□ -1.07
NUP54-202ENST00000502850 TOMM7Q9P0U1 55 aa8.35□□□□□ -1.07
NUP54-202ENST00000502850 ANK2Q01484 3957 aa8.35□□□□□ -1.07
NUP54-202ENST00000502850 IGHV4-28A0A0C4DH34 117 aa8.34□□□□□ -1.07
NUP54-202ENST00000502850 COX7A2LO14548 114 aa8.34□□□□□ -1.07
NUP54-202ENST00000502850 ATP5G1P05496 136 aa8.34□□□□□ -1.07
NUP54-202ENST00000502850 CRPP02741 224 aa8.33□□□□□ -1.08
NUP54-202ENST00000502850 C2orf82Q6UX34 121 aa8.33□□□□□ -1.08
NUP54-202ENST00000502850 SOSTDC1Q6X4U4 206 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms