RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 IGHV3OR16-9A0A0B4J2B5 98 aa12.15□□□□□ -0.46
USP40-217ENST00000496298 APOMO95445 188 aa12.15□□□□□ -0.46
USP40-217ENST00000496298 RAB5AP20339 215 aa12.15□□□□□ -0.46
USP40-217ENST00000496298 NDUFA5Q16718 116 aa12.15□□□□□ -0.46
USP40-217ENST00000496298 PYGO1Q9Y3Y4 419 aa12.15□□□□□ -0.46
USP40-217ENST00000496298 LOC107984640A0A0U1RRK4 108 aa12.14□□□□□ -0.47
USP40-217ENST00000496298 SERTAD4-AS1Q5TG53 156 aa12.14□□□□□ -0.47
USP40-217ENST00000496298 PTTG1IPP53801 180 aa12.13□□□□□ -0.47
USP40-217ENST00000496298 OR10D4PQ8NGN7 298 aa12.13□□□□□ -0.47
USP40-217ENST00000496298 CAMK2N2Q96S95 79 aa12.13□□□□□ -0.47
USP40-217ENST00000496298 HMCN2Q8NDA2 5059 aa12.13□□□□□ -0.47
USP40-217ENST00000496298 IFITM2Q01629 132 aa12.12□□□□□ -0.47
USP40-217ENST00000496298 RNF151Q2KHN1 245 aa12.12□□□□□ -0.47
USP40-217ENST00000496298 F8WDY8 70 aa12.11□□□□□ -0.47
USP40-217ENST00000496298 MT1HL1P0DM35 61 aa12.11□□□□□ -0.47
USP40-217ENST00000496298 IFI27P40305 119 aaPredicted RBP12.11□□□□□ -0.47
USP40-217ENST00000496298 PRR3P79522 188 aaKnown RBP12.11□□□□□ -0.47
USP40-217ENST00000496298 MAP1LC3AQ9H492 121 aa12.11□□□□□ -0.47
USP40-217ENST00000496298 IFITM10A6NMD0 228 aa12.1□□□□□ -0.47
USP40-217ENST00000496298 SPAG11BQ08648 103 aa12.1□□□□□ -0.47
USP40-217ENST00000496298 Q8N8P6 123 aa12.1□□□□□ -0.47
USP40-217ENST00000496298 IMMP2LQ96T52 175 aa12.1□□□□□ -0.47
USP40-217ENST00000496298 IGLV4-3A0A075B6K6 122 aa12.09□□□□□ -0.47
USP40-217ENST00000496298 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.09□□□□□ -0.47
USP40-217ENST00000496298 LOC389332A0A1B0GUA5 103 aa12.08□□□□□ -0.48
USP40-217ENST00000496298 GAGE2BQ13066 116 aa12.08□□□□□ -0.48
USP40-217ENST00000496298 UQCC3Q6UW78 93 aa12.08□□□□□ -0.48
USP40-217ENST00000496298 K7EMI3 77 aa12.07□□□□□ -0.48
USP40-217ENST00000496298 ADCYAP1P18509 176 aa12.07□□□□□ -0.48
USP40-217ENST00000496298 ORAOV1Q8WV07 137 aa12.07□□□□□ -0.48
USP40-217ENST00000496298 TMEM141Q96I45 108 aa12.07□□□□□ -0.48
USP40-217ENST00000496298 MRPL35Q9NZE8 188 aaKnown RBP12.07□□□□□ -0.48
USP40-217ENST00000496298 A0A087WZ39 114 aa12.06□□□□□ -0.48
USP40-217ENST00000496298 LINC00242Q5T6M2 205 aa12.06□□□□□ -0.48
USP40-217ENST00000496298 TGIF2-C20orf24A0A0A6YYL0 155 aa12.05□□□□□ -0.48
USP40-217ENST00000496298 A0A1W2PNN7 141 aa12.05□□□□□ -0.48
USP40-217ENST00000496298 TMEM218A2RU14 115 aa12.05□□□□□ -0.48
USP40-217ENST00000496298 CTDSP1Q9GZU7 261 aa12.05□□□□□ -0.48
USP40-217ENST00000496298 CYSLTR1Q9Y271 337 aa12.05□□□□□ -0.48
USP40-217ENST00000496298 A0A0J9YXV3 536 aa12.04□□□□□ -0.48
USP40-217ENST00000496298 NPSP0C0P6 89 aa12.04□□□□□ -0.48
USP40-217ENST00000496298 ORMDL2Q53FV1 153 aa12.04□□□□□ -0.48
USP40-217ENST00000496298 C2orf66Q6UXQ4 117 aa12.04□□□□□ -0.48
USP40-217ENST00000496298 NDUFA1O15239 70 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 UBE2D1P51668 147 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 KIAA0087Q14695 138 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 TEX43Q6ZNM6 134 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 Q6ZRP5 223 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 AMELXQ99217 191 aa12.03□□□□□ -0.48
USP40-217ENST00000496298 NXT2Q9NPJ8 142 aaKnown RBP12.03□□□□□ -0.48
USP40-217ENST00000496298 TRAV9-1A0A075B6T8 112 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 IGIPA6NJ69 53 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 TLX1NBP0CAT3 122 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 SRSF9Q13242 221 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP40-217ENST00000496298 C9orf116Q5BN46 136 aaPredicted RBP12.02□□□□□ -0.49
USP40-217ENST00000496298 C10orf25Q5T742 122 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 LINC00173Q6ZV60 143 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 LINC01561Q8N1V8 128 aa12.02□□□□□ -0.49
USP40-217ENST00000496298 RPL18AQ02543 176 aaKnown RBP12.01□□□□□ -0.49
USP40-217ENST00000496298 SPINK6Q6UWN8 80 aa12.01□□□□□ -0.49
USP40-217ENST00000496298 UNQ6190/PRO20217Q6UXQ8 127 aa12.01□□□□□ -0.49
USP40-217ENST00000496298 FAM19A3Q7Z5A8 133 aa12.01□□□□□ -0.49
USP40-217ENST00000496298 TNXBP22105 4242 aa12.01□□□□□ -0.49
USP40-217ENST00000496298 LINC01600Q96MT4 127 aa12□□□□□ -0.49
USP40-217ENST00000496298 SEC11CQ9BY50 192 aa12□□□□□ -0.49
USP40-217ENST00000496298 C6orf48Q9UBA6 75 aa12□□□□□ -0.49
USP40-217ENST00000496298 Q6ZN92 141 aa11.99□□□□□ -0.49
USP40-217ENST00000496298 C2orf88Q9BSF0 95 aa11.99□□□□□ -0.49
USP40-217ENST00000496298 VCX2Q9H322 139 aa11.99□□□□□ -0.49
USP40-217ENST00000496298 G0S2P27469 103 aa11.98□□□□□ -0.49
USP40-217ENST00000496298 ZC2HC1BQ5TFG8 222 aa11.98□□□□□ -0.49
USP40-217ENST00000496298 ATP6V1G1O75348 118 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 S100A1P23297 94 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 KIAA1644Q3SXP7 199 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 TIMM17AQ99595 171 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 GNB1LQ9BYB4 327 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 PLA2G2DQ9UNK4 145 aa11.96□□□□□ -0.49
USP40-217ENST00000496298 TRBV30A0A0K0K1B3 111 aa11.95□□□□□ -0.5
USP40-217ENST00000496298 PAPPA-AS1Q5QFB9 102 aa11.95□□□□□ -0.5
USP40-217ENST00000496298 TOMM6Q96B49 74 aa11.95□□□□□ -0.5
USP40-217ENST00000496298 C10orf91Q5T1B1 145 aa11.94□□□□□ -0.5
USP40-217ENST00000496298 PHF5AQ7RTV0 110 aaKnown RBP11.94□□□□□ -0.5
USP40-217ENST00000496298 PSORS1C2Q9UIG4 136 aa11.94□□□□□ -0.5
USP40-217ENST00000496298 LINC01546A6NGU7 62 aa11.93□□□□□ -0.5
USP40-217ENST00000496298 S100PP25815 95 aa11.93□□□□□ -0.5
USP40-217ENST00000496298 REG3GQ6UW15 175 aa11.93□□□□□ -0.5
USP40-217ENST00000496298 C2orf82Q6UX34 121 aa11.93□□□□□ -0.5
USP40-217ENST00000496298 KRTAP10-8P60410 259 aa11.92□□□□□ -0.5
USP40-217ENST00000496298 SEC11AP67812 179 aa11.92□□□□□ -0.5
USP40-217ENST00000496298 COX19Q49B96 90 aa11.92□□□□□ -0.5
USP40-217ENST00000496298 ERASQ7Z444 233 aa11.92□□□□□ -0.5
USP40-217ENST00000496298 COMMD7Q86VX2 200 aa11.92□□□□□ -0.5
USP40-217ENST00000496298 ALKBH7Q9BT30 221 aaPredicted RBP11.92□□□□□ -0.5
USP40-217ENST00000496298 FAM168BA1KXE4 195 aa11.91□□□□□ -0.5
USP40-217ENST00000496298 MT-ND6P03923 174 aa11.91□□□□□ -0.5
USP40-217ENST00000496298 HERVK_113P63121 156 aa11.91□□□□□ -0.5
USP40-217ENST00000496298 C4orf48Q5BLP8 95 aa11.91□□□□□ -0.5
USP40-217ENST00000496298 LINC01549A6NIU2 74 aa11.9□□□□□ -0.5
USP40-217ENST00000496298 NDUFC2-KCTD14E9PQ53 114 aa11.9□□□□□ -0.5
USP40-217ENST00000496298 KRTAP7-1Q8IUC3 87 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms