RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CFAP161Q6P656 301 aa9.61□□□□□ -0.87
BRCA1-223ENST00000494123 DNAH10Q8IVF4 4471 aa9.61□□□□□ -0.87
BRCA1-223ENST00000494123 S100A6P06703 90 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 Q8N814 137 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 GEMIN7Q9H840 131 aaKnown RBP9.6□□□□□ -0.87
BRCA1-223ENST00000494123 A0A0J9YXV3 536 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 HERVK_113P63121 156 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 FAM19A3Q7Z5A8 133 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 C5orf38Q86SI9 138 aa9.6□□□□□ -0.87
BRCA1-223ENST00000494123 H0Y8G0 127 aa9.59□□□□□ -0.87
BRCA1-223ENST00000494123 COX6A2Q02221 97 aa9.59□□□□□ -0.87
BRCA1-223ENST00000494123 IGHV3OR16-9A0A0B4J2B5 98 aa9.58□□□□□ -0.88
BRCA1-223ENST00000494123 APOMO95445 188 aa9.58□□□□□ -0.88
BRCA1-223ENST00000494123 SPATA12Q7Z6I5 190 aa9.58□□□□□ -0.88
BRCA1-223ENST00000494123 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.57□□□□□ -0.88
BRCA1-223ENST00000494123 TRAV12-1A0A0B4J245 112 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 IGHV1-58A0A0C4DH39 117 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 TINCRA0A1B0GVN0 87 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 A0A1B0GVY2 172 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 hDV102S1A0JD36 115 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 CHTOPQ9Y3Y2 248 aaKnown RBP9.57□□□□□ -0.88
BRCA1-223ENST00000494123 DNAH17Q9UFH2 4485 aa9.57□□□□□ -0.88
BRCA1-223ENST00000494123 LINC00469Q8N7U9 141 aa9.56□□□□□ -0.88
BRCA1-223ENST00000494123 C15orf56Q8N910 161 aa9.56□□□□□ -0.88
BRCA1-223ENST00000494123 PACRGQ96M98 296 aaPredicted RBP9.56□□□□□ -0.88
BRCA1-223ENST00000494123 MAP1LC3CQ9BXW4 147 aa9.56□□□□□ -0.88
BRCA1-223ENST00000494123 HIGD2BQ4VC39 106 aa9.56□□□□□ -0.88
BRCA1-223ENST00000494123 CHAC1Q9BUX1 264 aa9.56□□□□□ -0.88
BRCA1-223ENST00000494123 A0A087WZ39 114 aa9.55□□□□□ -0.88
BRCA1-223ENST00000494123 IGLC3P0DOY3 106 aa9.55□□□□□ -0.88
BRCA1-223ENST00000494123 NTN5Q8WTR8 489 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-223ENST00000494123 GVQW2A0A096LPI5 108 aaPredicted RBP9.54□□□□□ -0.88
BRCA1-223ENST00000494123 S100A2P29034 98 aa9.54□□□□□ -0.88
BRCA1-223ENST00000494123 KRTAP10-2P60368 255 aa9.54□□□□□ -0.88
BRCA1-223ENST00000494123 PGPEP1Q9NXJ5 209 aa9.54□□□□□ -0.88
BRCA1-223ENST00000494123 CDKN2A-AS1Q9UH64 79 aa9.54□□□□□ -0.88
BRCA1-223ENST00000494123 FAT2Q9NYQ8 4349 aa9.54□□□□□ -0.88
BRCA1-223ENST00000494123 IGLV4-69A0A075B6H9 119 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 IGLV5-52A0A0A0MRZ9 124 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 ZNF561-AS1K7EIQ3 104 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 CDPF1Q6NVV7 123 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 ORAOV1Q8WV07 137 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 F8VRH5 84 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 H3BRM9 83 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 FUSP35637 526 aaKnown RBP eCLIP9.53□□□□□ -0.88
BRCA1-223ENST00000494123 LINC01561Q8N1V8 128 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 OR10D4PQ8NGN7 298 aa9.53□□□□□ -0.88
BRCA1-223ENST00000494123 MRPL35Q9NZE8 188 aaKnown RBP9.53□□□□□ -0.88
BRCA1-223ENST00000494123 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
BRCA1-223ENST00000494123 IGLV5-45A0A087WSX0 123 aa9.52□□□□□ -0.89
BRCA1-223ENST00000494123 SNRPEP62304 92 aaKnown RBP9.52□□□□□ -0.89
BRCA1-223ENST00000494123 SPAG11BQ08648 103 aa9.52□□□□□ -0.89
BRCA1-223ENST00000494123 ODF1Q14990 250 aa9.52□□□□□ -0.89
BRCA1-223ENST00000494123 HIST3H2BBQ8N257 126 aa9.52□□□□□ -0.89
BRCA1-223ENST00000494123 C11orf86A6NJI1 115 aa9.51□□□□□ -0.89
BRCA1-223ENST00000494123 TMEM170BQ5T4T1 132 aa9.51□□□□□ -0.89
BRCA1-223ENST00000494123 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.5□□□□□ -0.89
BRCA1-223ENST00000494123 SYS1-DBNDD2H3BUS1 97 aa9.5□□□□□ -0.89
BRCA1-223ENST00000494123 LINC00526Q96FQ7 95 aa9.5□□□□□ -0.89
BRCA1-223ENST00000494123 C16orf90A8MZG2 172 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 PRSS2P07478 247 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 SPINK8P0C7L1 97 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 ZNF22P17026 224 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-223ENST00000494123 KRTDAPP60985 99 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 TOMM7Q9P0U1 55 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 PLNP26678 52 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 PMCHL2Q9BQD1 86 aa9.49□□□□□ -0.89
BRCA1-223ENST00000494123 PKD1P98161 4303 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 SMIM1B2RUZ4 78 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 C3orf79P0CE67 100 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 CNBPP62633 177 aaKnown RBP9.48□□□□□ -0.89
BRCA1-223ENST00000494123 PET117Q6UWS5 81 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 C2orf48Q96LS8 159 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 CAMK2N2Q96S95 79 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 HIST1H2BLQ99880 126 aa9.48□□□□□ -0.89
BRCA1-223ENST00000494123 TMA7Q9Y2S6 64 aaKnown RBP9.48□□□□□ -0.89
BRCA1-223ENST00000494123 C5orf52A6NGY3 159 aa9.47□□□□□ -0.89
BRCA1-223ENST00000494123 DPM2O94777 84 aa9.47□□□□□ -0.89
BRCA1-223ENST00000494123 HECTD4Q9Y4D8 3996 aa9.47□□□□□ -0.89
BRCA1-223ENST00000494123 SLPIP03973 132 aa9.46□□□□□ -0.89
BRCA1-223ENST00000494123 GCSHP23434 173 aa9.46□□□□□ -0.89
BRCA1-223ENST00000494123 SYCNQ0VAF6 134 aa9.46□□□□□ -0.89
BRCA1-223ENST00000494123 C6orf226Q5I0X4 101 aa9.46□□□□□ -0.89
BRCA1-223ENST00000494123 IGKCP01834 107 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 Q8IZM0 81 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 CARD19Q96LW7 228 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 C20orf202A1L168 122 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 F8WDY8 70 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 NDUFA1O15239 70 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 CKS1BP61024 79 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 KIAA0087Q14695 138 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 LINC01620Q4KN68 170 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 LINC01545Q5VT33 79 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 COX7B2Q8TF08 81 aa9.45□□□□□ -0.9
BRCA1-223ENST00000494123 C9orf163Q8N9P6 203 aa9.44□□□□□ -0.9
BRCA1-223ENST00000494123 DNAH11Q96DT5 4516 aa9.44□□□□□ -0.9
BRCA1-223ENST00000494123 TMEM223A0PJW6 202 aa9.43□□□□□ -0.9
BRCA1-223ENST00000494123 Q6ZRU5 148 aa9.43□□□□□ -0.9
BRCA1-223ENST00000494123 IGLV5-39A0A0G2JS06 123 aa9.42□□□□□ -0.9
BRCA1-223ENST00000494123 CXCL5P42830 114 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 261.3 ms