RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 FAM25CB3EWG5 89 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 FAM25GB3EWG6 89 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 COX6B1P14854 86 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 MT4P47944 62 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 LINC00470Q9BZP3 86 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 CRIPTQ9P021 101 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 WDR7Q9Y4E6 1490 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 RYR3Q15413 4870 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 BIRC6Q9NR09 4857 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 KNL1Q8NG31 2342 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 ITPR3Q14573 2671 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 HIVEP1P15822 2718 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 TNRC18O15417 2968 aaPredicted RBP-0.51□□□□□ -2.49
CD46-216ENST00000490278 KALRNO60229 2985 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 FASNP49327 2511 aaKnown RBP-0.51□□□□□ -2.49
CD46-216ENST00000490278 VPS13BQ7Z7G8 4022 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 FDCSPQ8NFU4 85 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 NAA60Q9H7X0 242 aa-0.51□□□□□ -2.49
CD46-216ENST00000490278 KDM5AP29375 1690 aaKnown RBP-0.52□□□□□ -2.49
CD46-216ENST00000490278 HMGXB3Q12766 1538 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 ZZEF1O43149 2961 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 SYS1-DBNDD2H3BUS1 97 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 GNG7O60262 68 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 CCDC58Q4VC31 144 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 MEIG1Q5JSS6 88 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 NDUFA4L2Q9NRX3 87 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 BTAF1O14981 1849 aa-0.52□□□□□ -2.49
CD46-216ENST00000490278 DMXL1Q9Y485 3027 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 IQSEC2Q5JU85 1478 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 AKAP13Q12802 2813 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 DNAH11Q96DT5 4516 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 DEFB135Q30KP9 77 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 SFTA2Q6UW10 78 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 BAGE2Q86Y30 109 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 LCN9Q8WX39 176 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 LINC00472Q9H8W2 130 aa-0.53□□□□□ -2.49
CD46-216ENST00000490278 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.53□□□□□ -2.49
CD46-216ENST00000490278 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.53□□□□□ -2.492e-8■■■■■ 30.4
CD46-216ENST00000490278 ARHGEF12Q9NZN5 1544 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 POLA1P09884 1462 aaPredicted RBP-0.54□□□□□ -2.5
CD46-216ENST00000490278 TRANK1O15050 2925 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 APOBP04114 4563 aaKnown RBP-0.54□□□□□ -2.5
CD46-216ENST00000490278 DOCK2Q92608 1830 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 F8VRH5 84 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 UQCR11O14957 56 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 SPINK4O60575 86 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 DEFB112Q30KQ8 113 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 PPP3R2Q96LZ3 170 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 MGST2Q99735 147 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 DYNLRB1Q9NP97 96 aa-0.54□□□□□ -2.5
CD46-216ENST00000490278 SONP18583 2426 aaKnown RBP-0.54□□□□□ -2.5
CD46-216ENST00000490278 FMN2Q9NZ56 1722 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 KIF21AQ7Z4S6 1674 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 TRBV7-3A0A075B6L6 115 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 LINC00959A0A1B0GUT2 108 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 IGLC7A0M8Q6 106 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 CPSF4LA6NMK7 179 aaKnown RBP-0.55□□□□□ -2.5
CD46-216ENST00000490278 NDUFA2O43678 99 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 APOC3P02656 99 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 SPRR2AP35326 72 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 TPPP2P59282 170 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 UBA52P62987 128 aaKnown RBP-0.55□□□□□ -2.5
CD46-216ENST00000490278 Q56UQ5 140 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 SBF2Q86WG5 1849 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 DNAH2Q9P225 4427 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 MYO18BQ8IUG5 2567 aa-0.55□□□□□ -2.5
CD46-216ENST00000490278 PSME4Q14997 1843 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 ACACAQ13085 2346 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 HMGN4O00479 90 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 SPRR2EP22531 72 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 BTG2P78543 158 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 H1FX-AS1Q4G0G2 97 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 RYR2Q92736 4967 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 NSD3Q9BZ95 1437 aa-0.56□□□□□ -2.5
CD46-216ENST00000490278 LAMA2P24043 3122 aaKnown RBP-0.57□□□□□ -2.5
CD46-216ENST00000490278 ANK3Q12955 4377 aaKnown RBP-0.57□□□□□ -2.5
CD46-216ENST00000490278 MIF4GDA9UHW6 222 aaKnown RBP-0.57□□□□□ -2.5
CD46-216ENST00000490278 C10orf113Q5VZT2 155 aa-0.57□□□□□ -2.5
CD46-216ENST00000490278 DNAH1Q9P2D7 4330 aa-0.57□□□□□ -2.5
CD46-216ENST00000490278 CPSF1Q10570 1443 aaKnown RBP-0.57□□□□□ -2.5
CD46-216ENST00000490278 PHLPP1O60346 1717 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 RIMS1Q86UR5 1692 aaKnown RBP-0.58□□□□□ -2.5
CD46-216ENST00000490278 GAPVD1Q14C86 1478 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 TRBV7-4A0A0J9YYF1 115 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 CHKB-CPT1BH3BT56 60 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 SFT2D2O95562 160 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 IGLC1P0CG04 106 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 LELP1Q5T871 98 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 FAM223AQ8IWN6 122 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 DEFB123Q8N688 67 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.58□□□□□ -2.5
CD46-216ENST00000490278 LINC01600Q96MT4 127 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 SPANXDQ9BXN6 97 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 LINC00474Q9P2X8 69 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 LINC01558Q9Y6Z2 57 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 LAMA1P25391 3075 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 PLECQ15149 4684 aaKnown RBP-0.58□□□□□ -2.5
CD46-216ENST00000490278 NAIPQ13075 1403 aa-0.58□□□□□ -2.5
CD46-216ENST00000490278 RNF213Q63HN8 5207 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 PDE4DIPQ5VU43 2346 aa-0.59□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms