RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FHL2Q14192 279 aa8.57□□□□□ -1.04
HDAC6-230ENST00000488543 DEFB121Q5J5C9 76 aa8.57□□□□□ -1.04
HDAC6-230ENST00000488543 LEPROTO15243 131 aa8.57□□□□□ -1.04
HDAC6-230ENST00000488543 RNF183Q96D59 192 aa8.57□□□□□ -1.04
HDAC6-230ENST00000488543 PRO1854Q9UHT4 67 aa8.56□□□□□ -1.04
HDAC6-230ENST00000488543 IGHV4-28A0A0C4DH34 117 aa8.56□□□□□ -1.04
HDAC6-230ENST00000488543 TRBV6-4A0A1B0GX49 114 aa8.56□□□□□ -1.04
HDAC6-230ENST00000488543 RPL36AP83881 106 aaKnown RBP8.56□□□□□ -1.04
HDAC6-230ENST00000488543 MRAPQ8TCY5 172 aa8.56□□□□□ -1.04
HDAC6-230ENST00000488543 RPL36ALQ969Q0 106 aaKnown RBP8.56□□□□□ -1.04
HDAC6-230ENST00000488543 SPATA25Q9BR10 227 aa8.56□□□□□ -1.04
HDAC6-230ENST00000488543 LOC100131303A0A0U1RQF7 123 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 GAGE12JA6NER3 117 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 J3QR89 54 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 SPINK8P0C7L1 97 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 IGHV3-30-3P0DP02 117 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 DEFB130BP0DP73 79 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 DEFB130AP0DP74 79 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 GAGE4Q13068 117 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 GAGE5Q13069 117 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 MRPL23Q16540 153 aaKnown RBP8.55□□□□□ -1.04
HDAC6-230ENST00000488543 SBSPONQ8IVN8 264 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 PYGO1Q9Y3Y4 419 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 A0A0J9YXY3 114 aa8.55□□□□□ -1.04
HDAC6-230ENST00000488543 KPRPQ5T749 579 aaPredicted RBP8.55□□□□□ -1.04
HDAC6-230ENST00000488543 TRGV4A0A0C4DH28 118 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 ADAMTSL4-AS1Q5T5F5 129 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 FAM222AQ5U5X8 452 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 Q6ZUT4 128 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 DAND5Q8N907 189 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 Q8NAQ8 132 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 PRSS2P07478 247 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 Q1RN00 199 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 NTM-AS1Q6ZSK4 140 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 ANKRD29Q8N6D5 301 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 TIMM21Q9BVV7 248 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 UBE2D4Q9Y2X8 147 aa8.54□□□□□ -1.04
HDAC6-230ENST00000488543 LYRM9A8MSI8 78 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 C9JAW5 83 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 IGHV3-33P01772 117 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 LINC00694P0DN24 101 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 DAZ4Q86SG3 579 aaKnown RBP8.53□□□□□ -1.04
HDAC6-230ENST00000488543 DAZ3Q9NR90 486 aaKnown RBP8.53□□□□□ -1.04
HDAC6-230ENST00000488543 MT-ATP8P03928 68 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 CELA1Q9UNI1 258 aa8.53□□□□□ -1.04
HDAC6-230ENST00000488543 MIFP14174 115 aa8.52□□□□□ -1.05
HDAC6-230ENST00000488543 HERV-K104P63124 156 aa8.52□□□□□ -1.05
HDAC6-230ENST00000488543 COL7A1Q02388 2944 aa8.52□□□□□ -1.05
HDAC6-230ENST00000488543 SPANXA1Q9NS26 97 aa8.52□□□□□ -1.05
HDAC6-230ENST00000488543 LITAFQ99732 161 aa8.51□□□□□ -1.05
HDAC6-230ENST00000488543 XGP55808 180 aa8.51□□□□□ -1.05
HDAC6-230ENST00000488543 ERG28Q9UKR5 140 aa8.51□□□□□ -1.05
HDAC6-230ENST00000488543 CRYBA4P53673 196 aa8.5□□□□□ -1.05
HDAC6-230ENST00000488543 TEN1Q86WV5 123 aa8.5□□□□□ -1.05
HDAC6-230ENST00000488543 M0QXV9 152 aa8.49□□□□□ -1.05
HDAC6-230ENST00000488543 NDUFA12Q9UI09 145 aa8.49□□□□□ -1.05
HDAC6-230ENST00000488543 SLC25A20O43772 301 aa8.49□□□□□ -1.05
HDAC6-230ENST00000488543 MRPS36P82909 103 aaKnown RBP8.49□□□□□ -1.05
HDAC6-230ENST00000488543 ZNF625Q96I27 306 aaPredicted RBP8.49□□□□□ -1.05
HDAC6-230ENST00000488543 MEGF8Q7Z7M0 2845 aa8.49□□□□□ -1.05
HDAC6-230ENST00000488543 TRIAP1O43715 76 aa8.48□□□□□ -1.05
HDAC6-230ENST00000488543 PPDPFLQ8WWR9 84 aa8.48□□□□□ -1.05
HDAC6-230ENST00000488543 CDKN2A-AS1Q9UH64 79 aa8.48□□□□□ -1.05
HDAC6-230ENST00000488543 COX6A2Q02221 97 aa8.48□□□□□ -1.05
HDAC6-230ENST00000488543 ATP6V0E2Q8NHE4 81 aa8.48□□□□□ -1.05
HDAC6-230ENST00000488543 KRTAP21-3Q3LHN1 58 aa8.47□□□□□ -1.05
HDAC6-230ENST00000488543 LYRM7Q5U5X0 104 aa8.47□□□□□ -1.05
HDAC6-230ENST00000488543 HUWE1Q7Z6Z7 4374 aaKnown RBP8.47□□□□□ -1.05
HDAC6-230ENST00000488543 IGHV1-58A0A0C4DH39 117 aa8.47□□□□□ -1.05
HDAC6-230ENST00000488543 VSIG2Q96IQ7 327 aa8.47□□□□□ -1.05
HDAC6-230ENST00000488543 PRO0255Q9UI72 69 aa8.47□□□□□ -1.05
HDAC6-230ENST00000488543 TRBV20-1A0A075B6N2 111 aa8.46□□□□□ -1.05
HDAC6-230ENST00000488543 GYPEP15421 78 aa8.46□□□□□ -1.05
HDAC6-230ENST00000488543 DAD1P61803 113 aa8.46□□□□□ -1.05
HDAC6-230ENST00000488543 CLEC2BQ92478 149 aa8.46□□□□□ -1.05
HDAC6-230ENST00000488543 A0A0B4J2C4 111 aa8.46□□□□□ -1.06
HDAC6-230ENST00000488543 NTN5Q8WTR8 489 aaPredicted RBP8.46□□□□□ -1.06
HDAC6-230ENST00000488543 TMEM243Q9BU79 118 aa8.46□□□□□ -1.06
HDAC6-230ENST00000488543 A0A0J9YWU9 116 aa8.45□□□□□ -1.06
HDAC6-230ENST00000488543 SPART-AS1P0CW21 52 aa8.45□□□□□ -1.06
HDAC6-230ENST00000488543 CSDC2Q9Y534 153 aaKnown RBP8.45□□□□□ -1.06
HDAC6-230ENST00000488543 TEX49A0A1B0GTD5 131 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 HTN3P15516 51 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 CKS1BP61024 79 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 TM2D3Q9BRN9 247 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 TRBV6-8A0A0A6YYG3 113 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 TINCRA0A1B0GVN0 87 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 PAX4O43316 350 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 LINC01620Q4KN68 170 aa8.44□□□□□ -1.06
HDAC6-230ENST00000488543 PRKDCP78527 4128 aaKnown RBP8.43□□□□□ -1.06
HDAC6-230ENST00000488543 ATP5G1P05496 136 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 SCGB1A1P11684 91 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 TMEM101Q96IK0 257 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 DNAH9Q9NYC9 4486 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.43□□□□□ -1.06
HDAC6-230ENST00000488543 TRAV13-1A0A0B4J241 112 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 H7C423 109 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 MIAQ16674 131 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 CDC42SE2Q9NRR3 84 aa8.43□□□□□ -1.06
HDAC6-230ENST00000488543 ICOSQ9Y6W8 199 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms