RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 IMMP2LQ96T52 175 aa10.34□□□□□ -0.75
VIM-204ENST00000478746 A0A1B0GW15 77 aa10.33□□□□□ -0.76
VIM-204ENST00000478746 ESDP10768 282 aa10.33□□□□□ -0.76
VIM-204ENST00000478746 UBE2D1P51668 147 aa10.33□□□□□ -0.76
VIM-204ENST00000478746 MRPL54Q6P161 138 aaKnown RBP10.33□□□□□ -0.76
VIM-204ENST00000478746 MRAP2Q96G30 205 aa10.33□□□□□ -0.76
VIM-204ENST00000478746 TRBV6-5A0A0K0K1A5 114 aa10.32□□□□□ -0.76
VIM-204ENST00000478746 COX7A2LO14548 114 aa10.32□□□□□ -0.76
VIM-204ENST00000478746 S100A8P05109 93 aa10.32□□□□□ -0.76
VIM-204ENST00000478746 C2orf48Q96LS8 159 aa10.32□□□□□ -0.76
VIM-204ENST00000478746 OPRPNQ99935 248 aaPredicted RBP10.32□□□□□ -0.76
VIM-204ENST00000478746 C1orf196B1AJZ1 125 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 TSHBP01222 138 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 KRTAP1-4P0C5Y4 121 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 HBBP68871 147 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 ATP5L2Q7Z4Y8 100 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 MRPL52Q86TS9 123 aaKnown RBP10.31□□□□□ -0.76
VIM-204ENST00000478746 ST20Q9HBF5 79 aa10.31□□□□□ -0.76
VIM-204ENST00000478746 TRAV9-1A0A075B6T8 112 aa10.3□□□□□ -0.76
VIM-204ENST00000478746 RPL13AP40429 203 aaKnown RBP10.3□□□□□ -0.76
VIM-204ENST00000478746 TMEM191AQ9H0A3 160 aa10.3□□□□□ -0.76
VIM-204ENST00000478746 RNF151Q2KHN1 245 aa10.29□□□□□ -0.76
VIM-204ENST00000478746 KRTAP11-1Q8IUC1 163 aa10.29□□□□□ -0.76
VIM-204ENST00000478746 A0A1B0GXF2 115 aa10.28□□□□□ -0.76
VIM-204ENST00000478746 C5orf38Q86SI9 138 aa10.27□□□□□ -0.77
VIM-204ENST00000478746 FAM168BA1KXE4 195 aa10.26□□□□□ -0.77
VIM-204ENST00000478746 POLR2KP53803 58 aaKnown RBP10.26□□□□□ -0.77
VIM-204ENST00000478746 TRBV27A0A0K0K1C4 114 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 ATP6V1G1O75348 118 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 TSPAN13O95857 204 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 S100A1P23297 94 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 SPAG11BQ08648 103 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 AMN1Q8IY45 258 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 SMCO4Q9NRQ5 59 aa10.25□□□□□ -0.77
VIM-204ENST00000478746 TRAV13-1A0A0B4J241 112 aa10.24□□□□□ -0.77
VIM-204ENST00000478746 RAB4AP20338 218 aa10.24□□□□□ -0.77
VIM-204ENST00000478746 FAM104BQ5XKR9 115 aa10.24□□□□□ -0.77
VIM-204ENST00000478746 SMAGPQ0VAQ4 97 aa10.23□□□□□ -0.77
VIM-204ENST00000478746 COX19Q49B96 90 aa10.23□□□□□ -0.77
VIM-204ENST00000478746 FAM19A5Q7Z5A7 132 aaPredicted RBP10.23□□□□□ -0.77
VIM-204ENST00000478746 CBLN2Q8IUK8 224 aa10.23□□□□□ -0.77
VIM-204ENST00000478746 MRPL35Q9NZE8 188 aaKnown RBP10.23□□□□□ -0.77
VIM-204ENST00000478746 TGIF2-C20orf24A0A0A6YYL0 155 aa10.22□□□□□ -0.77
VIM-204ENST00000478746 FCER1GP30273 86 aa10.22□□□□□ -0.77
VIM-204ENST00000478746 RNASE13Q5GAN3 156 aaKnown RBP10.22□□□□□ -0.77
VIM-204ENST00000478746 CSDC2Q9Y534 153 aaKnown RBP10.22□□□□□ -0.77
VIM-204ENST00000478746 TRBV24-1A0A075B6N3 115 aa10.21□□□□□ -0.77
VIM-204ENST00000478746 VCYO14598 125 aa10.21□□□□□ -0.77
VIM-204ENST00000478746 UBE2BP63146 152 aa10.21□□□□□ -0.77
VIM-204ENST00000478746 MRPL51Q4U2R6 128 aaKnown RBP10.21□□□□□ -0.77
VIM-204ENST00000478746 OR10D4PQ8NGN7 298 aa10.21□□□□□ -0.77
VIM-204ENST00000478746 F8WDY8 70 aa10.2□□□□□ -0.78
VIM-204ENST00000478746 CKS2P33552 79 aa10.2□□□□□ -0.78
VIM-204ENST00000478746 TMEM136Q6ZRR5 245 aa10.2□□□□□ -0.78
VIM-204ENST00000478746 UBE2D4Q9Y2X8 147 aa10.2□□□□□ -0.78
VIM-204ENST00000478746 SMKR1H3BMG3 65 aa10.19□□□□□ -0.78
VIM-204ENST00000478746 PPP1R17O96001 155 aa10.19□□□□□ -0.78
VIM-204ENST00000478746 GAGE2EQ4V326 116 aa10.19□□□□□ -0.78
VIM-204ENST00000478746 GNB1LQ9BYB4 327 aa10.19□□□□□ -0.78
VIM-204ENST00000478746 GAGE2DQ9UEU5 116 aa10.19□□□□□ -0.78
VIM-204ENST00000478746 D6R8Y8 96 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 NDUFA1O15239 70 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 PPBPP02775 128 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 TLX1NBP0CAT3 122 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 ORAOV1Q8WV07 137 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 YPEL4Q96NS1 127 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 KIR2DL4Q99706 377 aa10.18□□□□□ -0.78
VIM-204ENST00000478746 M0QXV9 152 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 SCO1O75880 301 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 C10orf25Q5T742 122 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 UNQ6190/PRO20217Q6UXQ8 127 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 Q6ZUT4 128 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 KRTAP7-1Q8IUC3 87 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 ORMDL3Q8N138 153 aa10.17□□□□□ -0.78
VIM-204ENST00000478746 SUMO2P61956 95 aaKnown RBP10.16□□□□□ -0.78
VIM-204ENST00000478746 TMEM18Q96B42 140 aa10.16□□□□□ -0.78
VIM-204ENST00000478746 FABP9Q0Z7S8 132 aa10.15□□□□□ -0.78
VIM-204ENST00000478746 NRACQ8N912 160 aa10.15□□□□□ -0.78
VIM-204ENST00000478746 PRELID3AQ96N28 172 aa10.15□□□□□ -0.78
VIM-204ENST00000478746 TIMM21Q9BVV7 248 aa10.15□□□□□ -0.78
VIM-204ENST00000478746 MRPL18Q9H0U6 180 aaKnown RBP10.15□□□□□ -0.78
VIM-204ENST00000478746 TRAPPC1Q9Y5R8 145 aa10.15□□□□□ -0.78
VIM-204ENST00000478746 ZNF861PO60384 105 aa10.14□□□□□ -0.79
VIM-204ENST00000478746 TNFRSF6BO95407 300 aa10.14□□□□□ -0.79
VIM-204ENST00000478746 C6orf48Q9UBA6 75 aa10.14□□□□□ -0.79
VIM-204ENST00000478746 NPYP01303 97 aa10.13□□□□□ -0.79
VIM-204ENST00000478746 KIAA1644Q3SXP7 199 aa10.13□□□□□ -0.79
VIM-204ENST00000478746 LAMTOR2Q9Y2Q5 125 aa10.13□□□□□ -0.79
VIM-204ENST00000478746 IGHV3OR16-9A0A0B4J2B5 98 aa10.12□□□□□ -0.79
VIM-204ENST00000478746 C20orf78Q9BR46 151 aa10.12□□□□□ -0.79
VIM-204ENST00000478746 COLCA2A8K830 154 aa10.11□□□□□ -0.79
VIM-204ENST00000478746 TYMSOSQ8TAI1 123 aa10.1□□□□□ -0.79
VIM-204ENST00000478746 MAP1LC3AQ9H492 121 aa10.1□□□□□ -0.79
VIM-204ENST00000478746 RAB5AP20339 215 aa10.09□□□□□ -0.79
VIM-204ENST00000478746 RPL39P62891 51 aaKnown RBP10.09□□□□□ -0.79
VIM-204ENST00000478746 RPL32P62910 135 aaKnown RBP10.09□□□□□ -0.79
VIM-204ENST00000478746 SMIM2Q9BVW6 85 aa10.09□□□□□ -0.79
VIM-204ENST00000478746 MUC17Q685J3 4493 aa10.08□□□□□ -0.8
VIM-204ENST00000478746 A0A087X002 238 aa10.08□□□□□ -0.8
VIM-204ENST00000478746 TCAPO15273 167 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms