RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 DYNLRB1Q9NP97 96 aa-2.35□□□□□ -2.79
PRPF40A-207ENST00000471701 RYR1P21817 5038 aa-2.35□□□□□ -2.79
PRPF40A-207ENST00000471701 ANKRD30AQ9BXX3 1397 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 LAMA1P25391 3075 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 HMGN4O00479 90 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 CKS1BP61024 79 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 Q8N8P6 123 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 NAA60Q9H7X0 242 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 NBASA2RRP1 2371 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 MYOM3Q5VTT5 1437 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 CUBNO60494 3623 aa-2.36□□□□□ -2.79
PRPF40A-207ENST00000471701 CPSF4LA6NMK7 179 aaKnown RBP-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 ARPC5O15511 151 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 SFT2D2O95562 160 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 IFNGP01579 166 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 MGST2Q99735 147 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 GSKIPQ9P0R6 139 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 PAPPA2Q9BXP8 1791 aa-2.37□□□□□ -2.79
PRPF40A-207ENST00000471701 MAGI1Q96QZ7 1491 aaPredicted RBP-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 TMEM263Q8WUH6 116 aaKnown RBP-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 TEP1Q99973 2627 aaKnown RBP-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 SELENOSQ9BQE4 189 aa-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 SETBP1Q9Y6X0 1596 aa-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 PSME4Q14997 1843 aa-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 KIAA1109Q2LD37 5005 aa-2.38□□□□□ -2.79
PRPF40A-207ENST00000471701 VPS13BQ7Z7G8 4022 aa-2.39□□□□□ -2.79
PRPF40A-207ENST00000471701 TRBV7-3A0A075B6L6 115 aa-2.39□□□□□ -2.79
PRPF40A-207ENST00000471701 HIST1H1DP16402 221 aaKnown RBP-2.39□□□□□ -2.79
PRPF40A-207ENST00000471701 USMG5Q96IX5 58 aa-2.39□□□□□ -2.79
PRPF40A-207ENST00000471701 ARHGEF5Q12774 1597 aa-2.4□□□□□ -2.79
PRPF40A-207ENST00000471701 TSTD1Q8NFU3 115 aa-2.4□□□□□ -2.79
PRPF40A-207ENST00000471701 LSM10Q969L4 123 aaKnown RBP-2.4□□□□□ -2.79
PRPF40A-207ENST00000471701 TPT1P8Q9HAU6 139 aa-2.4□□□□□ -2.79
PRPF40A-207ENST00000471701 MYOM1P52179 1685 aa-2.41□□□□□ -2.79
PRPF40A-207ENST00000471701 PIGBOS1A0A0B4J2F0 54 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 MGPP08493 103 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 SCGB1A1P11684 91 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 H1FX-AS1Q4G0G2 97 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 C9orf62Q8N4C0 152 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 DPH3Q96FX2 82 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 LINC01600Q96MT4 127 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 REV3LO60673 3130 aa-2.41□□□□□ -2.8
PRPF40A-207ENST00000471701 FDCSPQ8NFU4 85 aa-2.42□□□□□ -2.8
PRPF40A-207ENST00000471701 SPRR4Q96PI1 79 aa-2.42□□□□□ -2.8
PRPF40A-207ENST00000471701 TNRC18O15417 2968 aaPredicted RBP-2.43□□□□□ -2.8
PRPF40A-207ENST00000471701 COPZ1P61923 177 aa-2.43□□□□□ -2.8
PRPF40A-207ENST00000471701 S100A5P33763 92 aa-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 RPS25P62851 125 aaKnown RBP-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 SMCO1Q147U7 214 aa-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 PDCD10Q9BUL8 212 aa-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 TMEM191AQ9H0A3 160 aa-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 DNAH2Q9P225 4427 aa-2.44□□□□□ -2.8
PRPF40A-207ENST00000471701 IGLC1P0CG04 106 aa-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 UBA52P62987 128 aaKnown RBP-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 C12orf73Q69YU5 71 aa-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 MRPL54Q6P161 138 aaKnown RBP-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 LCN9Q8WX39 176 aa-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 ZZEF1O43149 2961 aa-2.45□□□□□ -2.8
PRPF40A-207ENST00000471701 LAMA2P24043 3122 aaKnown RBP-2.46□□□□□ -2.8
PRPF40A-207ENST00000471701 CFTRP13569 1480 aa-2.46□□□□□ -2.8
PRPF40A-207ENST00000471701 DMXL1Q9Y485 3027 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 TET3O43151 1660 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 APOBP04114 4563 aaKnown RBP-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 ADAMTS12P58397 1594 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 LOC285095A0A1B0GVY8 99 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 TCEAL4Q96EI5 215 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 CRIPTQ9P021 101 aa-2.47□□□□□ -2.8
PRPF40A-207ENST00000471701 MT1AP04731 61 aa-2.48□□□□□ -2.81
PRPF40A-207ENST00000471701 NXT2Q9NPJ8 142 aaKnown RBP-2.48□□□□□ -2.81
PRPF40A-207ENST00000471701 FAIMQ9NVQ4 179 aa-2.48□□□□□ -2.81
PRPF40A-207ENST00000471701 TRANK1O15050 2925 aa-2.48□□□□□ -2.81
PRPF40A-207ENST00000471701 SHROOM2Q13796 1616 aa-2.49□□□□□ -2.81
PRPF40A-207ENST00000471701 PTPN23Q9H3S7 1636 aa-2.49□□□□□ -2.81
PRPF40A-207ENST00000471701 COL4A6Q14031 1691 aa-2.49□□□□□ -2.81
PRPF40A-207ENST00000471701 CCDC167Q9P0B6 97 aa-2.49□□□□□ -2.81
PRPF40A-207ENST00000471701 KNL1Q8NG31 2342 aa-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 NKTRP30414 1462 aaKnown RBP-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 GRIN2AQ12879 1464 aa-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 C1orf167Q5SNV9 1468 aa-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 A0A0G2JMZ2 1700 aa-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 FAM223AQ8IWN6 122 aa-2.5□□□□□ -2.81
PRPF40A-207ENST00000471701 CPSF1Q10570 1443 aaKnown RBP-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 XRN1Q8IZH2 1706 aaKnown RBP-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 SLIT1O75093 1534 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 CHKB-CPT1BH3BT56 60 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 B2MP61769 119 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 AKAP14Q86UN6 197 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 MYOZ3Q8TDC0 251 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 FAM167A-AS1Q96KT0 104 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 SERP1Q9Y6X1 66 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 SCN7AQ01118 1682 aa-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 MARF1Q9Y4F3 1742 aaKnown RBP-2.51□□□□□ -2.81
PRPF40A-207ENST00000471701 KALRNO60229 2985 aa-2.52□□□□□ -2.81
PRPF40A-207ENST00000471701 COPZ2Q9P299 210 aa-2.52□□□□□ -2.81
PRPF40A-207ENST00000471701 DNAH11Q96DT5 4516 aa-2.52□□□□□ -2.81
PRPF40A-207ENST00000471701 LZICQ8WZA0 190 aa-2.53□□□□□ -2.81
PRPF40A-207ENST00000471701 SSSCA1O60232 199 aa-2.54□□□□□ -2.82
PRPF40A-207ENST00000471701 LINC00474Q9P2X8 69 aa-2.54□□□□□ -2.82
PRPF40A-207ENST00000471701 ARL2-SNX15V9GYD0 113 aa-2.54□□□□□ -2.82
PRPF40A-207ENST00000471701 ANK3Q12955 4377 aaKnown RBP-2.54□□□□□ -2.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms