RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 IFITM10A6NMD0 228 aa11.25□□□□□ -0.61
MSH6-207ENST00000456246 F8WDY8 70 aa11.25□□□□□ -0.61
MSH6-207ENST00000456246 UQCC3Q6UW78 93 aa11.25□□□□□ -0.61
MSH6-207ENST00000456246 LRP1Q07954 4544 aaKnown RBP11.24□□□□□ -0.61
MSH6-207ENST00000456246 SPAG11BQ08648 103 aa11.24□□□□□ -0.61
MSH6-207ENST00000456246 FAM104AQ969W3 186 aa11.24□□□□□ -0.61
MSH6-207ENST00000456246 IMMP2LQ96T52 175 aa11.24□□□□□ -0.61
MSH6-207ENST00000456246 IGHV3OR16-9A0A0B4J2B5 98 aa11.23□□□□□ -0.61
MSH6-207ENST00000456246 K7EMI3 77 aa11.23□□□□□ -0.61
MSH6-207ENST00000456246 PTTG1IPP53801 180 aa11.23□□□□□ -0.61
MSH6-207ENST00000456246 SERTAD4-AS1Q5TG53 156 aa11.23□□□□□ -0.61
MSH6-207ENST00000456246 RNF151Q2KHN1 245 aa11.22□□□□□ -0.61
MSH6-207ENST00000456246 Q8N8P6 123 aa11.22□□□□□ -0.61
MSH6-207ENST00000456246 TGIF2-C20orf24A0A0A6YYL0 155 aa11.21□□□□□ -0.61
MSH6-207ENST00000456246 ORAOV1Q8WV07 137 aa11.21□□□□□ -0.61
MSH6-207ENST00000456246 TMEM141Q96I45 108 aa11.21□□□□□ -0.61
MSH6-207ENST00000456246 OPRPNQ99935 248 aaPredicted RBP11.21□□□□□ -0.61
MSH6-207ENST00000456246 CYSLTR1Q9Y271 337 aa11.21□□□□□ -0.61
MSH6-207ENST00000456246 LOC389332A0A1B0GUA5 103 aa11.2□□□□□ -0.62
MSH6-207ENST00000456246 PRR3P79522 188 aaKnown RBP11.2□□□□□ -0.62
MSH6-207ENST00000456246 ORMDL2Q53FV1 153 aa11.2□□□□□ -0.62
MSH6-207ENST00000456246 CTDSP1Q9GZU7 261 aa11.2□□□□□ -0.62
MSH6-207ENST00000456246 MRPL35Q9NZE8 188 aaKnown RBP11.2□□□□□ -0.62
MSH6-207ENST00000456246 PKHD1L1Q86WI1 4243 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 IGLV4-3A0A075B6K6 122 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 TRAV9-1A0A075B6T8 112 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 NPSP0C0P6 89 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 GAGE2BQ13066 116 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 Q6ZN92 141 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 TEX43Q6ZNM6 134 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 C2orf88Q9BSF0 95 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 NXT2Q9NPJ8 142 aaKnown RBP11.19□□□□□ -0.62
MSH6-207ENST00000456246 FAT3Q8TDW7 4589 aa11.19□□□□□ -0.62
MSH6-207ENST00000456246 TMEM218A2RU14 115 aa11.18□□□□□ -0.62
MSH6-207ENST00000456246 NDUFA1O15239 70 aa11.18□□□□□ -0.62
MSH6-207ENST00000456246 G0S2P27469 103 aa11.18□□□□□ -0.62
MSH6-207ENST00000456246 A0A087WZ39 114 aa11.17□□□□□ -0.62
MSH6-207ENST00000456246 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.17□□□□□ -0.62
MSH6-207ENST00000456246 C2orf66Q6UXQ4 117 aa11.17□□□□□ -0.62
MSH6-207ENST00000456246 ADCYAP1P18509 176 aa11.16□□□□□ -0.62
MSH6-207ENST00000456246 RPL18AQ02543 176 aaKnown RBP11.16□□□□□ -0.62
MSH6-207ENST00000456246 PAPPA-AS1Q5QFB9 102 aa11.15□□□□□ -0.62
MSH6-207ENST00000456246 LINC00242Q5T6M2 205 aa11.15□□□□□ -0.62
MSH6-207ENST00000456246 Q6ZRP5 223 aa11.15□□□□□ -0.62
MSH6-207ENST00000456246 LINC01561Q8N1V8 128 aa11.15□□□□□ -0.62
MSH6-207ENST00000456246 SEC11CQ9BY50 192 aa11.15□□□□□ -0.62
MSH6-207ENST00000456246 S100PP25815 95 aa11.14□□□□□ -0.63
MSH6-207ENST00000456246 UBE2D1P51668 147 aa11.14□□□□□ -0.63
MSH6-207ENST00000456246 IFITM2Q01629 132 aa11.14□□□□□ -0.63
MSH6-207ENST00000456246 VCX2Q9H322 139 aa11.14□□□□□ -0.63
MSH6-207ENST00000456246 TLX1NBP0CAT3 122 aa11.13□□□□□ -0.63
MSH6-207ENST00000456246 C9orf116Q5BN46 136 aaPredicted RBP11.12□□□□□ -0.63
MSH6-207ENST00000456246 SPINK6Q6UWN8 80 aa11.12□□□□□ -0.63
MSH6-207ENST00000456246 AMELXQ99217 191 aa11.12□□□□□ -0.63
MSH6-207ENST00000456246 A0A0J9YXV3 536 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 A0A1W2PNN7 141 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 IGIPA6NJ69 53 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 MT1HL1P0DM35 61 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 SEC11AP67812 179 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 COX19Q49B96 90 aa11.11□□□□□ -0.63
MSH6-207ENST00000456246 LINC01549A6NIU2 74 aa11.1□□□□□ -0.63
MSH6-207ENST00000456246 KIAA0087Q14695 138 aa11.1□□□□□ -0.63
MSH6-207ENST00000456246 LINC00173Q6ZV60 143 aa11.1□□□□□ -0.63
MSH6-207ENST00000456246 TIMM17AQ99595 171 aa11.1□□□□□ -0.63
MSH6-207ENST00000456246 GNB1LQ9BYB4 327 aa11.1□□□□□ -0.63
MSH6-207ENST00000456246 TRBV30A0A0K0K1B3 111 aa11.09□□□□□ -0.63
MSH6-207ENST00000456246 UNQ6190/PRO20217Q6UXQ8 127 aa11.09□□□□□ -0.63
MSH6-207ENST00000456246 FAM19A3Q7Z5A8 133 aa11.09□□□□□ -0.63
MSH6-207ENST00000456246 C6orf48Q9UBA6 75 aa11.09□□□□□ -0.63
MSH6-207ENST00000456246 C10orf25Q5T742 122 aa11.08□□□□□ -0.64
MSH6-207ENST00000456246 REG3GQ6UW15 175 aa11.08□□□□□ -0.64
MSH6-207ENST00000456246 COMMD7Q86VX2 200 aa11.08□□□□□ -0.64
MSH6-207ENST00000456246 TOMM6Q96B49 74 aa11.08□□□□□ -0.64
MSH6-207ENST00000456246 PACRGQ96M98 296 aaPredicted RBP11.08□□□□□ -0.64
MSH6-207ENST00000456246 MT-ND6P03923 174 aa11.07□□□□□ -0.64
MSH6-207ENST00000456246 HERVK_113P63121 156 aa11.07□□□□□ -0.64
MSH6-207ENST00000456246 KIAA1644Q3SXP7 199 aa11.07□□□□□ -0.64
MSH6-207ENST00000456246 LINC01600Q96MT4 127 aa11.07□□□□□ -0.64
MSH6-207ENST00000456246 PLA2G2DQ9UNK4 145 aa11.07□□□□□ -0.64
MSH6-207ENST00000456246 PRSS2P07478 247 aa11.06□□□□□ -0.64
MSH6-207ENST00000456246 RHEBQ15382 184 aa11.06□□□□□ -0.64
MSH6-207ENST00000456246 ERASQ7Z444 233 aa11.06□□□□□ -0.64
MSH6-207ENST00000456246 SRSF9Q13242 221 aaKnown RBP eCLIP11.05□□□□□ -0.64
MSH6-207ENST00000456246 NDUFC2-KCTD14E9PQ53 114 aa11.04□□□□□ -0.64
MSH6-207ENST00000456246 C10orf91Q5T1B1 145 aa11.04□□□□□ -0.64
MSH6-207ENST00000456246 ZC2HC1BQ5TFG8 222 aa11.04□□□□□ -0.64
MSH6-207ENST00000456246 Q8IZM0 81 aa11.04□□□□□ -0.64
MSH6-207ENST00000456246 GEMIN7Q9H840 131 aaKnown RBP11.04□□□□□ -0.64
MSH6-207ENST00000456246 CARHSP1Q9Y2V2 147 aaKnown RBP11.04□□□□□ -0.64
MSH6-207ENST00000456246 CKS1BP61024 79 aa11.03□□□□□ -0.64
MSH6-207ENST00000456246 SCGB3A1Q96QR1 104 aa11.03□□□□□ -0.64
MSH6-207ENST00000456246 ALKBH7Q9BT30 221 aaPredicted RBP11.03□□□□□ -0.64
MSH6-207ENST00000456246 PSORS1C2Q9UIG4 136 aa11.03□□□□□ -0.64
MSH6-207ENST00000456246 LINC01546A6NGU7 62 aa11.02□□□□□ -0.65
MSH6-207ENST00000456246 GAGE2EQ4V326 116 aa11.02□□□□□ -0.65
MSH6-207ENST00000456246 C2orf82Q6UX34 121 aa11.02□□□□□ -0.65
MSH6-207ENST00000456246 PHF5AQ7RTV0 110 aaKnown RBP11.02□□□□□ -0.65
MSH6-207ENST00000456246 TOMM7Q9P0U1 55 aa11.02□□□□□ -0.65
MSH6-207ENST00000456246 GAGE2DQ9UEU5 116 aa11.02□□□□□ -0.65
MSH6-207ENST00000456246 C6orf226Q5I0X4 101 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 161.6 ms