RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 UBE2D4Q9Y2X8 147 aa2.36□□□□□ -2.03
HMGB3P21-201ENST00000452483 A0A087WVE0 104 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 MGPP08493 103 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 BAGE3Q86Y29 109 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 C5orf56Q8N8D9 126 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 LINC00304Q8N9R0 145 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 LOC285556D6RIA3 1793 aa2.35□□□□□ -2.03
HMGB3P21-201ENST00000452483 MDC1Q14676 2089 aaKnown RBP2.34□□□□□ -2.03
HMGB3P21-201ENST00000452483 INE1O15225 51 aa2.34□□□□□ -2.03
HMGB3P21-201ENST00000452483 WFDC6Q9BQY6 131 aa2.34□□□□□ -2.03
HMGB3P21-201ENST00000452483 SNURFQ9Y675 71 aa2.34□□□□□ -2.03
HMGB3P21-201ENST00000452483 ALPK2Q86TB3 2170 aa2.34□□□□□ -2.04
HMGB3P21-201ENST00000452483 SHANK1Q9Y566 2161 aa2.34□□□□□ -2.04
HMGB3P21-201ENST00000452483 ABCA6Q8N139 1617 aa2.34□□□□□ -2.04
HMGB3P21-201ENST00000452483 PCDH15Q96QU1 1955 aa2.34□□□□□ -2.04
HMGB3P21-201ENST00000452483 XRN1Q8IZH2 1706 aaKnown RBP2.34□□□□□ -2.04
HMGB3P21-201ENST00000452483 FANCD2Q9BXW9 1451 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 TNRC6BQ9UPQ9 1833 aaKnown RBP2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 ABCA4P78363 2273 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 ADAMTS9Q9P2N4 1935 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 A0A087WTM6 91 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 IGFL1Q6UW32 110 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 LINC00208Q96KT6 92 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 PREX1Q8TCU6 1659 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 MYO7BQ6PIF6 2116 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 SIPA1L3O60292 1781 aaPredicted RBP2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 COL5A1P20908 1838 aaPredicted RBP2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 PRXQ9BXM0 1461 aa2.33□□□□□ -2.04
HMGB3P21-201ENST00000452483 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 LOC110117498A0A087WWA1 95 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 M0R2N4 97 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 ATXN8Q156A1 80 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 HCP5Q6MZN7 132 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 ZNF625Q96I27 306 aaPredicted RBP2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 NKTRP30414 1462 aaKnown RBP2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 FREM1Q5H8C1 2179 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 ADGRB2O60241 1585 aa2.32□□□□□ -2.04
HMGB3P21-201ENST00000452483 RNF17Q9BXT8 1623 aaKnown RBP2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 SHROOM3Q8TF72 1996 aa2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 DEFB107AQ8IZN7 70 aa2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 FAM103A1Q9BTL3 118 aaKnown RBP2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 PRRC2AP48634 2157 aaKnown RBP2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 PRRC2BQ5JSZ5 2229 aaKnown RBP2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 CDC42BPGQ6DT37 1551 aa2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 PLCH1Q4KWH8 1693 aa2.31□□□□□ -2.04
HMGB3P21-201ENST00000452483 RTTNQ86VV8 2226 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 TRGV2A0A075B6R0 118 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 FXYD6-FXYD2A0A087WZ82 144 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 TRAV1-2A0A0B4J238 106 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 A0A1B0GUT8 65 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 ZNF137PP52743 207 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 COX17Q14061 63 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 SMIM4Q8WVI0 70 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 LINC00846Q9NV44 126 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 KIF1AQ12756 1690 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 TET1Q8NFU7 2136 aa2.3□□□□□ -2.04
HMGB3P21-201ENST00000452483 SHPRHQ149N8 1683 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 PIK3C2BO00750 1634 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 TRGV1A0A0A0MS02 117 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 TRBV7-4A0A0J9YYF1 115 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 S100A3P33764 101 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 DOCK10Q96BY6 2186 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 ANKRD36A6QL64 1941 aa2.29□□□□□ -2.04
HMGB3P21-201ENST00000452483 CRYBG1Q9Y4K1 1723 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 ATP7BP35670 1465 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 A0A0D9SFI3 127 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 IGKV4-1P06312 121 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 ACYP2P14621 99 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 GDF5OSQ5U4N7 250 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 CYYR1Q96J86 154 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 Q96NJ1 140 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 FXYD6Q9H0Q3 95 aa2.28□□□□□ -2.04
HMGB3P21-201ENST00000452483 GLI2P10070 1586 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 CEP170BQ9Y4F5 1589 aaPredicted RBP2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 RALGAPBQ86X10 1494 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 H0Y9P7 68 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 CAV3P56539 151 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 LCE3EQ5T5B0 92 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 Q6ZQY7 126 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 Q6ZRN7 208 aaPredicted RBP2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 SPRR4Q96PI1 79 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 NUP188Q5SRE5 1749 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 ITSN2Q9NZM3 1697 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 LAMC1P11047 1609 aa2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 FN1P02751 2386 aaKnown RBP2.27□□□□□ -2.05
HMGB3P21-201ENST00000452483 CD163L1Q9NR16 1453 aa2.26□□□□□ -2.05
HMGB3P21-201ENST00000452483 A0A1B0GUL6 1792 aa2.26□□□□□ -2.05
HMGB3P21-201ENST00000452483 ZNF236Q9UL36 1845 aa2.26□□□□□ -2.05
HMGB3P21-201ENST00000452483 PKD1L3Q7Z443 1732 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 COL4A1P02462 1669 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 CFAP43Q8NDM7 1665 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 MYO7AQ13402 2215 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 NOTCH2Q04721 2471 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 SNRPGP15A8MWD9 76 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 HCRTO43612 131 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 NDUFB1O75438 58 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 C10orf113Q5VZT2 155 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 CCL19Q99731 98 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 PLAC8Q9NZF1 115 aa2.25□□□□□ -2.05
HMGB3P21-201ENST00000452483 TOP2AP11388 1531 aaKnown RBP2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms