RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MUC7Q8TAX7 377 aa9.75□□□□□ -0.85
USP40-208ENST00000450966 PTPRQQ9UMZ3 2332 aa9.75□□□□□ -0.85
USP40-208ENST00000450966 UBE2D4Q9Y2X8 147 aa9.74□□□□□ -0.85
USP40-208ENST00000450966 DCANP1Q8TF63 244 aa9.73□□□□□ -0.85
USP40-208ENST00000450966 MED13Q9UHV7 2174 aa9.73□□□□□ -0.85
USP40-208ENST00000450966 Q6ZSV7 163 aa9.73□□□□□ -0.85
USP40-208ENST00000450966 TRBV6-4A0A1B0GX49 114 aa9.73□□□□□ -0.85
USP40-208ENST00000450966 MAP6D1Q9H9H5 199 aa9.73□□□□□ -0.85
USP40-208ENST00000450966 A0A0J9YWU9 116 aa9.72□□□□□ -0.85
USP40-208ENST00000450966 COX17Q14061 63 aa9.72□□□□□ -0.85
USP40-208ENST00000450966 PSMG3-AS1Q96PY0 264 aa9.72□□□□□ -0.85
USP40-208ENST00000450966 FHL2Q14192 279 aa9.72□□□□□ -0.85
USP40-208ENST00000450966 ADAMTSL4-AS1Q5T5F5 129 aa9.72□□□□□ -0.85
USP40-208ENST00000450966 KTN1-AS1Q86SY8 53 aa9.71□□□□□ -0.85
USP40-208ENST00000450966 TANC2Q9HCD6 1990 aa9.71□□□□□ -0.85
USP40-208ENST00000450966 IGLV2-18A0A075B6J9 118 aa9.71□□□□□ -0.85
USP40-208ENST00000450966 LINC01546A6NGU7 62 aa9.71□□□□□ -0.85
USP40-208ENST00000450966 COL5A1P20908 1838 aaPredicted RBP9.71□□□□□ -0.85
USP40-208ENST00000450966 C8orf87E5RJ46 101 aa9.71□□□□□ -0.85
USP40-208ENST00000450966 HIGD2AQ9BW72 106 aa9.71□□□□□ -0.86
USP40-208ENST00000450966 UNQ9165/PRO28630Q6UXU0 137 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 HIVEP2P31629 2446 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 HCG22E2RYF7 251 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 DEFB1P60022 68 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 MSMPQ1L6U9 139 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 SPAG11AQ6PDA7 123 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 TTC28Q96AY4 2481 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 DHRS4-AS1Q9P1J3 65 aa9.7□□□□□ -0.86
USP40-208ENST00000450966 ZNF106Q9H2Y7 1883 aaKnown RBP9.69□□□□□ -0.86
USP40-208ENST00000450966 NCKAP5O14513 1909 aa9.69□□□□□ -0.86
USP40-208ENST00000450966 RNASE3P12724 160 aaKnown RBP9.69□□□□□ -0.86
USP40-208ENST00000450966 C11orf21Q9P2W6 132 aa9.69□□□□□ -0.86
USP40-208ENST00000450966 PRM2P04554 102 aa9.68□□□□□ -0.86
USP40-208ENST00000450966 COX8CQ7Z4L0 72 aa9.68□□□□□ -0.86
USP40-208ENST00000450966 ATRXP46100 2492 aa9.68□□□□□ -0.86
USP40-208ENST00000450966 HCFC1P51610 2035 aa9.68□□□□□ -0.86
USP40-208ENST00000450966 CYP4F30PQ9H0H9 118 aa9.68□□□□□ -0.86
USP40-208ENST00000450966 COL4A3Q01955 1670 aa9.67□□□□□ -0.86
USP40-208ENST00000450966 MUC22E2RYF6 1773 aaPredicted RBP9.67□□□□□ -0.86
USP40-208ENST00000450966 LINC01548A6NM66 108 aa9.67□□□□□ -0.86
USP40-208ENST00000450966 DEFB114Q30KQ6 69 aa9.66□□□□□ -0.86
USP40-208ENST00000450966 LCA10Q71F78 164 aa9.66□□□□□ -0.86
USP40-208ENST00000450966 ACACBO00763 2458 aa9.66□□□□□ -0.86
USP40-208ENST00000450966 TRAV10A0A0B4J240 114 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 ZNF73O43830 326 aaPredicted RBP9.65□□□□□ -0.86
USP40-208ENST00000450966 FHL3Q13643 280 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 NOTCH2Q04721 2471 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 CHCHD10Q8WYQ3 142 aaPredicted RBP9.65□□□□□ -0.86
USP40-208ENST00000450966 IGKV2-24A0A0C4DH68 120 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 M0R378 163 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 WISP2O76076 250 aa9.65□□□□□ -0.86
USP40-208ENST00000450966 CCDC140Q96MF4 163 aa9.64□□□□□ -0.87
USP40-208ENST00000450966 C1orf229Q6ZS94 237 aaPredicted RBP9.64□□□□□ -0.87
USP40-208ENST00000450966 BDP1A6H8Y1 2624 aa9.64□□□□□ -0.87
USP40-208ENST00000450966 DEFB131BA0A096LNP1 70 aa9.64□□□□□ -0.87
USP40-208ENST00000450966 REG3AQ06141 175 aa9.64□□□□□ -0.87
USP40-208ENST00000450966 AMELXQ99217 191 aa9.64□□□□□ -0.87
USP40-208ENST00000450966 H0Y9P7 68 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 LY6LH3BQJ8 138 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 ERC2-IT1O76042 136 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 TNCP24821 2201 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 SMIM1B2RUZ4 78 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 C7orf65Q6ZTY9 151 aa9.63□□□□□ -0.87
USP40-208ENST00000450966 Q6ZTI0 123 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 Q8IZM0 81 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 LINC01006Q8NI28 216 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 NUP210LQ5VU65 1888 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 LINC00242Q5T6M2 205 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 CD164L2Q6UWJ8 174 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 ATP11AUNQ6ZP68 121 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 ZNF702PQ9H963 129 aa9.62□□□□□ -0.87
USP40-208ENST00000450966 K7EQG2 157 aa9.61□□□□□ -0.87
USP40-208ENST00000450966 PRR15Q8IV56 129 aa9.61□□□□□ -0.87
USP40-208ENST00000450966 MDFIQ99750 246 aa9.61□□□□□ -0.87
USP40-208ENST00000450966 C10orf25Q5T742 122 aa9.61□□□□□ -0.87
USP40-208ENST00000450966 TRBV6-8A0A0A6YYG3 113 aa9.6□□□□□ -0.87
USP40-208ENST00000450966 RETNLBQ9BQ08 111 aa9.6□□□□□ -0.87
USP40-208ENST00000450966 LINC00474Q9P2X8 69 aa9.6□□□□□ -0.87
USP40-208ENST00000450966 LINC00575Q6W349 94 aa9.6□□□□□ -0.87
USP40-208ENST00000450966 KLKP1Q107X0 134 aa9.59□□□□□ -0.87
USP40-208ENST00000450966 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.59□□□□□ -0.87
USP40-208ENST00000450966 OTOGLQ3ZCN5 2332 aa9.59□□□□□ -0.87
USP40-208ENST00000450966 CEP192Q8TEP8 1941 aa9.59□□□□□ -0.87
USP40-208ENST00000450966 KLLNB2CW77 178 aa9.58□□□□□ -0.88
USP40-208ENST00000450966 PRR9Q5T870 116 aa9.58□□□□□ -0.88
USP40-208ENST00000450966 ARHGAP32A7KAX9 2087 aa9.58□□□□□ -0.88
USP40-208ENST00000450966 C16orf95Q9H693 158 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 CDC42SE2Q9NRR3 84 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 XAGE1AQ9HD64 81 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 ZNF580Q9UK33 172 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 PCNX3Q9H6A9 2034 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 SMCR5Q8TEV8 140 aa9.57□□□□□ -0.88
USP40-208ENST00000450966 C7orf33Q8WU49 177 aa9.56□□□□□ -0.88
USP40-208ENST00000450966 H3BPC8 53 aa9.56□□□□□ -0.88
USP40-208ENST00000450966 C1orf137Q5JT78 98 aa9.56□□□□□ -0.88
USP40-208ENST00000450966 LINC00482Q8N8I6 264 aa9.56□□□□□ -0.88
USP40-208ENST00000450966 PROK1P58294 105 aa9.55□□□□□ -0.88
USP40-208ENST00000450966 NUPR2A6NF83 97 aa9.55□□□□□ -0.88
USP40-208ENST00000450966 AGRNO00468 2067 aa9.55□□□□□ -0.88
USP40-208ENST00000450966 SPG11Q96JI7 2443 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms