RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 XCL1P47992 114 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 POLR2KP53803 58 aaKnown RBP2.29□□□□□ -2.04
VPS54-204ENST00000416400 KLKP1Q107X0 134 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 HCP5Q6MZN7 132 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 BRD3OSQ6XYD6 125 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 SCXQ7RTU7 201 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 ZFAND2AQ8N6M9 145 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 DSCR8Q96T75 97 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 CCL13Q99616 98 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 UBL5Q9BZL1 73 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 UBE2D4Q9Y2X8 147 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 KLK5Q9Y337 293 aaPredicted RBP2.29□□□□□ -2.04
VPS54-204ENST00000416400 SDK2Q58EX2 2172 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 SPTBP11277 2137 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 KIAA2026Q5HYC2 2103 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 PAPPA2Q9BXP8 1791 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 TRAV26-2A0A0B4J265 109 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 IGHV1-18A0A0C4DH31 117 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 TRBV7-6A0A0J9YX20 115 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 TRBV27A0A0K0K1C4 114 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 ERC2-IT1O76042 136 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 RBM3P98179 157 aaKnown RBP2.28□□□□□ -2.04
VPS54-204ENST00000416400 DEFB133Q30KQ1 61 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 LYPD5Q6UWN5 251 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 BRK1Q8WUW1 75 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 AMELXQ99217 191 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 NDUFA12Q9UI09 145 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 MPDZO75970 2070 aa2.28□□□□□ -2.04
VPS54-204ENST00000416400 ATG2AQ2TAZ0 1938 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 IGLV10-54A0A075B6I4 117 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 IGKV2-40A0A087WW87 121 aaPredicted RBP2.27□□□□□ -2.05
VPS54-204ENST00000416400 TMEM256-PLSCR3K7ERE1 68 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 IGKV2D-40P01614 121 aaPredicted RBP2.27□□□□□ -2.05
VPS54-204ENST00000416400 CCKP06307 115 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 IGHV3-30-3P0DP02 117 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 RPL28P46779 137 aaKnown RBP2.27□□□□□ -2.05
VPS54-204ENST00000416400 BLCAPP62952 87 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 DEFB103AP81534 67 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 GPHB5Q86YW7 130 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 PRR15Q8IV56 129 aa2.27□□□□□ -2.05
VPS54-204ENST00000416400 C11orf68Q9H3H3 251 aaKnown RBP2.27□□□□□ -2.05
VPS54-204ENST00000416400 MRPL36Q9P0J6 103 aaKnown RBP2.27□□□□□ -2.05
VPS54-204ENST00000416400 GOLGA4Q13439 2230 aaKnown RBP2.26□□□□□ -2.05
VPS54-204ENST00000416400 A0A1W2PNM2 257 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 E7EQL1 145 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 E7EUB6 86 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 K7EIM0 57 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 M0R1W7 72 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 CTSGP08311 255 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 MGPP08493 103 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 RNASE4P34096 147 aaKnown RBP2.26□□□□□ -2.05
VPS54-204ENST00000416400 C20orf197Q8N268 126 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 SMCR5Q8TEV8 140 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 CLEC2BQ92478 149 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 LEAP2Q969E1 77 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 OBSCN-AS1Q96MR7 158 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 EML5Q05BV3 1969 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 SPAG17Q6Q759 2223 aa2.26□□□□□ -2.05
VPS54-204ENST00000416400 KMT2EQ8IZD2 1858 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 IGLV3-9A0A075B6K5 115 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 IGKV3D-7A0A0C4DH55 119 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 H7BZZ5 65 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 NDUFA1O15239 70 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 LINC00313P59037 77 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 LINC00308Q8TCZ7 52 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 GAFA1Q96PS6 74 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 ORMDL1Q9P0S3 153 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 KAAG1Q9UBP8 84 aa2.25□□□□□ -2.05
VPS54-204ENST00000416400 TRAV12-3A0A0B4J271 114 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 FAM223BA6NKX1 122 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 IBA57-AS1B1ANH7 110 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 BUB1B-PAK6H3BSN5 160 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 UBE2L6O14933 153 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 CRPP02741 224 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 MIFP14174 115 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 TSPEAR-AS2P59090 65 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 ESRGQ1W209 222 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 KLK9Q2XQG4 91 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 C10orf55Q5SWW7 151 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 DEFB108BQ8NET1 73 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 WFDC11Q8NEX6 87 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 Q8TAT8 98 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 TTTY12Q9BZ98 90 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 C16orf95Q9H693 158 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 LINC00846Q9NV44 126 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 KLK9Q9UKQ9 250 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 MED12LQ86YW9 2145 aa2.24□□□□□ -2.05
VPS54-204ENST00000416400 TRAV23DV6A0A075B6W5 121 aa2.23□□□□□ -2.05
VPS54-204ENST00000416400 Q1T7F1 81 aa2.23□□□□□ -2.05
VPS54-204ENST00000416400 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.23□□□□□ -2.05
VPS54-204ENST00000416400 FP248Q71RG6 208 aaPredicted RBP2.23□□□□□ -2.05
VPS54-204ENST00000416400 FAM223AQ8IWN6 122 aa2.23□□□□□ -2.05
VPS54-204ENST00000416400 RPL39LQ96EH5 51 aaKnown RBP2.23□□□□□ -2.05
VPS54-204ENST00000416400 NCOA6Q14686 2063 aaPredicted RBP2.22□□□□□ -2.05
VPS54-204ENST00000416400 KIAA1549LQ6ZVL6 1849 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 F8WEM9 126 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 M0QY20 66 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 CCL4P13236 92 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 FUSP35637 526 aaKnown RBP eCLIP2.22□□□□□ -2.05
VPS54-204ENST00000416400 SNRPD3P62318 126 aaKnown RBP2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms