RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NOP10Q9NPE3 64 aaKnown RBP14.91□□□□□ -0.02
CTCF-202ENST00000401394 CR1P17927 2039 aa14.91□□□□□ -0.02
CTCF-202ENST00000401394 F5H768 121 aa14.91□□□□□ -0.02
CTCF-202ENST00000401394 BEAN1Q3B7T3 259 aa14.91□□□□□ -0.02
CTCF-202ENST00000401394 C11orf68Q9H3H3 251 aaKnown RBP14.91□□□□□ -0.02
CTCF-202ENST00000401394 Q6Q795 121 aa14.9□□□□□ -0.02
CTCF-202ENST00000401394 HERVK_113P63121 156 aa14.9□□□□□ -0.02
CTCF-202ENST00000401394 SHISA2Q6UWI4 295 aa14.9□□□□□ -0.02
CTCF-202ENST00000401394 TIMM17BO60830 172 aa14.89□□□□□ -0.03
CTCF-202ENST00000401394 ATP5G1P05496 136 aa14.89□□□□□ -0.03
CTCF-202ENST00000401394 LINC00337Q8N6G1 96 aa14.89□□□□□ -0.03
CTCF-202ENST00000401394 HERV-K104P63124 156 aa14.88□□□□□ -0.03
CTCF-202ENST00000401394 DEFB121Q5J5C9 76 aa14.88□□□□□ -0.03
CTCF-202ENST00000401394 CDC42SE2Q9NRR3 84 aa14.88□□□□□ -0.03
CTCF-202ENST00000401394 A8MTW9 85 aa14.87□□□□□ -0.03
CTCF-202ENST00000401394 GAGE2AQ6NT46 116 aa14.87□□□□□ -0.03
CTCF-202ENST00000401394 MIR7-3HGQ8N6C7 128 aa14.87□□□□□ -0.03
CTCF-202ENST00000401394 A0A087WYN8 130 aa14.86□□□□□ -0.03
CTCF-202ENST00000401394 STHQ8IWL8 128 aa14.86□□□□□ -0.03
CTCF-202ENST00000401394 IGKV2-28A0A075B6P5 120 aa14.85□□□□□ -0.03
CTCF-202ENST00000401394 IGKV2D-28P01615 120 aa14.85□□□□□ -0.03
CTCF-202ENST00000401394 DNAJC30Q96LL9 226 aa14.85□□□□□ -0.03
CTCF-202ENST00000401394 KLK5Q9Y337 293 aaPredicted RBP14.85□□□□□ -0.03
CTCF-202ENST00000401394 PFN2P35080 140 aa14.85□□□□□ -0.03
CTCF-202ENST00000401394 K7EQD1 137 aa14.84□□□□□ -0.03
CTCF-202ENST00000401394 SLPIP03973 132 aa14.84□□□□□ -0.03
CTCF-202ENST00000401394 RPL36AP83881 106 aaKnown RBP14.84□□□□□ -0.03
CTCF-202ENST00000401394 RPL36ALQ969Q0 106 aaKnown RBP14.84□□□□□ -0.03
CTCF-202ENST00000401394 IGLV4-60A0A075B6I1 120 aa14.84□□□□□ -0.03
CTCF-202ENST00000401394 IGHV4-31P0DP07 118 aa14.83□□□□□ -0.03
CTCF-202ENST00000401394 RPL35AP18077 110 aaKnown RBP14.83□□□□□ -0.03
CTCF-202ENST00000401394 FAM240AA0A1B0GVK7 77 aa14.82□□□□□ -0.04
CTCF-202ENST00000401394 PEMTQ9UBM1 199 aa14.82□□□□□ -0.04
CTCF-202ENST00000401394 C5orf38Q86SI9 138 aa14.82□□□□□ -0.04
CTCF-202ENST00000401394 TRBV7-7A0A0K0K1E9 115 aa14.81□□□□□ -0.04
CTCF-202ENST00000401394 USP24Q9UPU5 2620 aa14.81□□□□□ -0.04
CTCF-202ENST00000401394 C14orf132Q9NPU4 83 aa14.81□□□□□ -0.04
CTCF-202ENST00000401394 LINC00158P58513 81 aa14.8□□□□□ -0.04
CTCF-202ENST00000401394 UBE2L6O14933 153 aa14.79□□□□□ -0.04
CTCF-202ENST00000401394 TRGV2A0A075B6R0 118 aa14.79□□□□□ -0.04
CTCF-202ENST00000401394 SDIM1Q6ZPB5 146 aa14.79□□□□□ -0.04
CTCF-202ENST00000401394 SMIM11BQ8TCY0 68 aa14.79□□□□□ -0.04
CTCF-202ENST00000401394 SND1-IT1Q9HBX3 110 aa14.79□□□□□ -0.04
CTCF-202ENST00000401394 GIG44P09565 113 aaPredicted RBP14.78□□□□□ -0.04
CTCF-202ENST00000401394 CLPSL2Q6UWE3 100 aa14.78□□□□□ -0.04
CTCF-202ENST00000401394 C4orf3Q8WVX3 66 aa14.78□□□□□ -0.04
CTCF-202ENST00000401394 VWFP04275 2813 aa14.77□□□□□ -0.04
CTCF-202ENST00000401394 PRR3P79522 188 aaKnown RBP14.77□□□□□ -0.05
CTCF-202ENST00000401394 IGKV3D-7A0A0C4DH55 119 aa14.76□□□□□ -0.05
CTCF-202ENST00000401394 HIST2H2BCQ6DN03 193 aa14.76□□□□□ -0.05
CTCF-202ENST00000401394 FSHBP01225 129 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 HIVEP2P31629 2446 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 CCL18P55774 89 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 IL17DQ8TAD2 202 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 COX7B2Q8TF08 81 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 TMEM243Q9BU79 118 aa14.75□□□□□ -0.05
CTCF-202ENST00000401394 NCR3O14931 201 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 CRPP02741 224 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 MALP21145 153 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 CYSTM1Q9H1C7 97 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 A0A087WVE0 104 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 A0A096LPF7 62 aa14.74□□□□□ -0.05
CTCF-202ENST00000401394 OR13C6PQ8NH95 151 aa14.73□□□□□ -0.05
CTCF-202ENST00000401394 BBC3Q96PG8 261 aaPredicted RBP14.73□□□□□ -0.05
CTCF-202ENST00000401394 PLAC8L1A1L4L8 177 aa14.73□□□□□ -0.05
CTCF-202ENST00000401394 MRPL23Q16540 153 aaKnown RBP14.73□□□□□ -0.05
CTCF-202ENST00000401394 TRACP01848 142 aa14.73□□□□□ -0.05
CTCF-202ENST00000401394 LECT2O14960 151 aa14.72□□□□□ -0.05
CTCF-202ENST00000401394 DSCR9P59020 149 aa14.72□□□□□ -0.05
CTCF-202ENST00000401394 PPDPFQ9H3Y8 114 aa14.72□□□□□ -0.05
CTCF-202ENST00000401394 LOC107984640A0A0U1RRK4 108 aa14.71□□□□□ -0.05
CTCF-202ENST00000401394 LINC00643Q86TS7 51 aa14.71□□□□□ -0.05
CTCF-202ENST00000401394 J3QLI3 93 aa14.7□□□□□ -0.06
CTCF-202ENST00000401394 C9orf153Q5TBE3 101 aa14.7□□□□□ -0.06
CTCF-202ENST00000401394 PAX4O43316 350 aa14.7□□□□□ -0.06
CTCF-202ENST00000401394 CSDC2Q9Y534 153 aaKnown RBP14.7□□□□□ -0.06
CTCF-202ENST00000401394 TRGV4A0A0C4DH28 118 aa14.69□□□□□ -0.06
CTCF-202ENST00000401394 CCL24O00175 119 aa14.68□□□□□ -0.06
CTCF-202ENST00000401394 DEFB130BP0DP73 79 aa14.68□□□□□ -0.06
CTCF-202ENST00000401394 DEFB130AP0DP74 79 aa14.68□□□□□ -0.06
CTCF-202ENST00000401394 RPL28P46779 137 aaKnown RBP14.68□□□□□ -0.06
CTCF-202ENST00000401394 ZNF843Q8N446 348 aa14.68□□□□□ -0.06
CTCF-202ENST00000401394 LINC00846Q9NV44 126 aa14.68□□□□□ -0.06
CTCF-202ENST00000401394 UBR5O95071 2799 aaPredicted RBP14.68□□□□□ -0.06
CTCF-202ENST00000401394 XCL1P47992 114 aa14.67□□□□□ -0.06
CTCF-202ENST00000401394 FAM19A3Q7Z5A8 133 aa14.67□□□□□ -0.06
CTCF-202ENST00000401394 TRBV10-1A0A0K0K1A3 114 aa14.67□□□□□ -0.06
CTCF-202ENST00000401394 ESM1Q9NQ30 184 aa14.67□□□□□ -0.06
CTCF-202ENST00000401394 ITPR2Q14571 2701 aa14.66□□□□□ -0.06
CTCF-202ENST00000401394 Q8N3U1 123 aa14.66□□□□□ -0.06
CTCF-202ENST00000401394 DNAL4O96015 105 aa14.66□□□□□ -0.06
CTCF-202ENST00000401394 IGHV3OR16-9A0A0B4J2B5 98 aa14.65□□□□□ -0.06
CTCF-202ENST00000401394 ACYP1P07311 99 aa14.65□□□□□ -0.06
CTCF-202ENST00000401394 FAM110AQ9BQ89 295 aa14.65□□□□□ -0.06
CTCF-202ENST00000401394 WFDC9Q8NEX5 89 aa14.65□□□□□ -0.06
CTCF-202ENST00000401394 TRAV13-2A0A0B4J235 113 aa14.64□□□□□ -0.07
CTCF-202ENST00000401394 C3orf22Q8N5N4 141 aa14.63□□□□□ -0.07
CTCF-202ENST00000401394 LRRC75A-AS1Q8N1F1 130 aa14.62□□□□□ -0.07
CTCF-202ENST00000401394 CFAP161Q6P656 301 aa14.61□□□□□ -0.07
CTCF-202ENST00000401394 DNAJC9-AS1A6NH13 148 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms