RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C9orf163Q8N9P6 203 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 PSORS1C2Q9UIG4 136 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 V9GYH0 126 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 GREB1Q4ZG55 1949 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 MYO7AQ13402 2215 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 TRAV10A0A0B4J240 114 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 A0A1W2PNM2 257 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 EDDM3BP56851 147 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 ZNF818PQ6ZRF7 136 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 Q8N9L7 120 aa2.36□□□□□ -2.03
HMGB1-204ENST00000399489 COL27A1Q8IZC6 1860 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-204ENST00000399489 FXYD6-FXYD2A0A087WZ82 144 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 TMSB15BA0A087X1C1 80 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 TRAV22A0A0B4J277 110 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 IGKV3-11P04433 115 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 COX6CP09669 75 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 C3orf79P0CE67 100 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 TET1Q8NFU7 2136 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 FXYD6Q9H0Q3 95 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 Q9Y3F1 56 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 LHFPL6Q9Y693 200 aa2.35□□□□□ -2.03
HMGB1-204ENST00000399489 PTPRDP23468 1912 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 CEP295Q9C0D2 2601 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 TRBV7-3A0A075B6L6 115 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 SNRPGP15A8MWD9 76 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 FXYD1O00168 92 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 HMGN2P05204 90 aaKnown RBP2.34□□□□□ -2.03
HMGB1-204ENST00000399489 HRES1P13985 223 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 PYDC2Q56P42 97 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 C10orf128Q5T292 105 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 SFTA2Q6UW10 78 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 C2orf82Q6UX34 121 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 LIMD2Q9BT23 127 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 BPESC1Q9GZL8 116 aa2.34□□□□□ -2.03
HMGB1-204ENST00000399489 DIDO1Q9BTC0 2240 aaKnown RBP2.34□□□□□ -2.03
HMGB1-204ENST00000399489 SCN3AQ9NY46 2000 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 TRBV25-1A0A075B6N4 114 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 TRAV23DV6A0A075B6W5 121 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 IGKV3D-11A0A0A0MRZ8 115 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 A0A0D9SFI3 127 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 A0A1B0GWA3 101 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 CHKB-CPT1BH3BT56 60 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 TFF1P04155 84 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 P0C880 135 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 GCHFRP30047 84 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 MOBPQ13875 183 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 DEFB121Q5J5C9 76 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 C20orf197Q8N268 126 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 Q9BRP9 147 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 ANAPC11Q9NYG5 84 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 HILPDAQ9Y5L2 63 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 ARL2-SNX15V9GYD0 113 aa2.34□□□□□ -2.04
HMGB1-204ENST00000399489 NAV2Q8IVL1 2488 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 DMXL2Q8TDJ6 3036 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 HELZ2Q9BYK8 2649 aaKnown RBP2.33□□□□□ -2.04
HMGB1-204ENST00000399489 NACAE9PAV3 2078 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 EXPH5Q8NEV8 1989 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 TRAV12-3A0A0B4J271 114 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 TEX49A0A1B0GTD5 131 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 CXorf51AA0A1B0GTR3 108 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 LOC285095A0A1B0GVY8 99 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 SDHAF1A6NFY7 115 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 ZNF815PA8K554 130 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 IQCF6A8MYZ5 107 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 LY6EQ16553 131 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 DEFB113Q30KQ7 82 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 BAGE3Q86Y29 109 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 BAGE2Q86Y30 109 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 Q8TAT8 98 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 C22orf24Q9Y442 160 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 PRR14LQ5THK1 2151 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 IGF2RP11717 2491 aa2.33□□□□□ -2.04
HMGB1-204ENST00000399489 KIAA2026Q5HYC2 2103 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 SIP14410 1827 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 TANC1Q9C0D5 1861 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 MYMXA0A1B0GTQ4 84 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 F8WEM9 126 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 ERHP84090 104 aaKnown RBP2.32□□□□□ -2.04
HMGB1-204ENST00000399489 Q5VV11 94 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 NDUFA11Q86Y39 141 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 IFI27L1Q96BM0 104 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 PRO2289Q9P1D8 64 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 GCN1Q92616 2671 aaKnown RBP2.32□□□□□ -2.04
HMGB1-204ENST00000399489 MUC4Q99102 2169 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 MICAL3Q7RTP6 2002 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 CNOT1A5YKK6 2376 aaKnown RBP2.32□□□□□ -2.04
HMGB1-204ENST00000399489 PLXNA2O75051 1894 aa2.32□□□□□ -2.04
HMGB1-204ENST00000399489 NUMA1Q14980 2115 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 TMEM30CPA0ZSE6 113 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 CEBPZOSA8MTT3 80 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 TMEM14DPA8MWL7 114 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 PLGLAQ15195 96 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-204ENST00000399489 CLECL1Q8IZS7 167 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 GNG13Q9P2W3 67 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 CACNA1DQ01668 2161 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 TRAV12-1A0A0B4J245 112 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 CCL26Q9Y258 94 aa2.31□□□□□ -2.04
HMGB1-204ENST00000399489 PCNX2A6NKB5 2137 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms