RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MRPL23Q16540 153 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 CMYA5Q8N3K9 4069 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 FAM19A3Q7Z5A8 133 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 ICOSQ9Y6W8 199 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 A0A0J9YWU9 116 aa12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 IGHV3-30-3P0DP02 117 aa12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 RPL24P83731 157 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 NTM-AS1Q6ZSK4 140 aa12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 C11orf45Q8TAV5 145 aa12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 NOTCH1P46531 2555 aa12.72□□□□□ -0.37
CCDC88C-203ENST00000389856 IGLV5-45A0A087WSX0 123 aa12.71□□□□□ -0.37
CCDC88C-203ENST00000389856 H3BNG1 76 aa12.71□□□□□ -0.37
CCDC88C-203ENST00000389856 VSIG2Q96IQ7 327 aa12.71□□□□□ -0.37
CCDC88C-203ENST00000389856 GEMIN7Q9H840 131 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-203ENST00000389856 PGPEP1Q9NXJ5 209 aa12.71□□□□□ -0.37
CCDC88C-203ENST00000389856 Q6ZUT4 128 aa12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 MRAPQ8TCY5 172 aa12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 MGAM2Q2M2H8 2515 aa12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 CEMP1Q6PRD7 247 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 CHCHD5Q9BSY4 110 aa12.7□□□□□ -0.38
CCDC88C-203ENST00000389856 A0A0J9YXY3 114 aa12.69□□□□□ -0.38
CCDC88C-203ENST00000389856 HERVK_113P63121 156 aa12.69□□□□□ -0.38
CCDC88C-203ENST00000389856 DNAH3Q8TD57 4116 aa12.68□□□□□ -0.38
CCDC88C-203ENST00000389856 A0A0B4J2C4 111 aa12.67□□□□□ -0.38
CCDC88C-203ENST00000389856 TIMM17BO60830 172 aa12.67□□□□□ -0.38
CCDC88C-203ENST00000389856 PRO1854Q9UHT4 67 aa12.67□□□□□ -0.38
CCDC88C-203ENST00000389856 FBN3Q75N90 2809 aa12.67□□□□□ -0.38
CCDC88C-203ENST00000389856 NBEAL1Q6ZS30 2694 aa12.67□□□□□ -0.38
CCDC88C-203ENST00000389856 TSPAN13O95857 204 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 ZFAND6Q6FIF0 208 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 C10orf126Q8N4M7 172 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 SPANXDQ9BXN6 97 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 SPANXCQ9NY87 97 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 NDUFA12Q9UI09 145 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 CFC1BP0CG36 223 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 CFC1P0CG37 223 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 Q6ZTC4 211 aa12.66□□□□□ -0.38
CCDC88C-203ENST00000389856 TRBV20-1A0A075B6N2 111 aa12.65□□□□□ -0.38
CCDC88C-203ENST00000389856 APOMO95445 188 aa12.65□□□□□ -0.38
CCDC88C-203ENST00000389856 B9D2Q9BPU9 175 aa12.65□□□□□ -0.38
CCDC88C-203ENST00000389856 GAGE6Q13070 117 aa12.64□□□□□ -0.39
CCDC88C-203ENST00000389856 IGHV3-64A0A075B6Q5 118 aa12.63□□□□□ -0.39
CCDC88C-203ENST00000389856 NANOS2P60321 138 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-203ENST00000389856 RNASE13Q5GAN3 156 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-203ENST00000389856 CDC42SE2Q9NRR3 84 aa12.63□□□□□ -0.39
CCDC88C-203ENST00000389856 DEFB131BA0A096LNP1 70 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 TRAV10A0A0B4J240 114 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 IFITM1P13164 125 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 A0A096LPF7 62 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 TRAV8-3A0A0A6YYJ7 113 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 IGLV5-39A0A0G2JS06 123 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 A4D1N5 150 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 NDUFA1O15239 70 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 RNF151Q2KHN1 245 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 MUSTN1Q8IVN3 82 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 LITAFQ99732 161 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 VPS25Q9BRG1 176 aa12.62□□□□□ -0.39
CCDC88C-203ENST00000389856 A0A1B0GUV1 79 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 H3BMG7 143 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 J3QR89 54 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 SPINK8P0C7L1 97 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 LELP1Q5T871 98 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 CDKN2A-AS1Q9UH64 79 aa12.61□□□□□ -0.39
CCDC88C-203ENST00000389856 TMEM262E9PQX1 116 aa12.6□□□□□ -0.39
CCDC88C-203ENST00000389856 NHLRC4P0CG21 123 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-203ENST00000389856 MIAQ16674 131 aa12.6□□□□□ -0.39
CCDC88C-203ENST00000389856 LINC00242Q5T6M2 205 aa12.6□□□□□ -0.39
CCDC88C-203ENST00000389856 PRO0461Q9UI25 63 aa12.6□□□□□ -0.39
CCDC88C-203ENST00000389856 COPS9Q8WXC6 57 aa12.59□□□□□ -0.39
CCDC88C-203ENST00000389856 LOC107984156A0A0G2JMH3 177 aa12.59□□□□□ -0.39
CCDC88C-203ENST00000389856 CIRBPQ14011 172 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-203ENST00000389856 ARL17AQ8IVW1 177 aa12.59□□□□□ -0.39
CCDC88C-203ENST00000389856 ERG28Q9UKR5 140 aa12.59□□□□□ -0.39
CCDC88C-203ENST00000389856 IGHV3-33P01772 117 aa12.58□□□□□ -0.4
CCDC88C-203ENST00000389856 C15orf53Q8NAA6 179 aa12.57□□□□□ -0.4
CCDC88C-203ENST00000389856 WFDC2Q14508 124 aa12.56□□□□□ -0.4
CCDC88C-203ENST00000389856 PPDPFQ9H3Y8 114 aa12.56□□□□□ -0.4
CCDC88C-203ENST00000389856 TRAV13-1A0A0B4J241 112 aa12.55□□□□□ -0.4
CCDC88C-203ENST00000389856 PSMB2P49721 201 aa12.55□□□□□ -0.4
CCDC88C-203ENST00000389856 HERV-K104P63124 156 aa12.55□□□□□ -0.4
CCDC88C-203ENST00000389856 LYPD5Q6UWN5 251 aa12.55□□□□□ -0.4
CCDC88C-203ENST00000389856 M0QXV9 152 aa12.54□□□□□ -0.4
CCDC88C-203ENST00000389856 COX6A2Q02221 97 aa12.54□□□□□ -0.4
CCDC88C-203ENST00000389856 SMIM1B2RUZ4 78 aa12.53□□□□□ -0.4
CCDC88C-203ENST00000389856 PRSS2P07478 247 aa12.53□□□□□ -0.4
CCDC88C-203ENST00000389856 SCGB1C2P0DMR2 95 aa12.53□□□□□ -0.4
CCDC88C-203ENST00000389856 IGLV4-60A0A075B6I1 120 aa12.52□□□□□ -0.4
CCDC88C-203ENST00000389856 TRBV30A0A0K0K1B3 111 aa12.52□□□□□ -0.4
CCDC88C-203ENST00000389856 SS18Q15532 418 aa12.51□□□□□ -0.41
CCDC88C-203ENST00000389856 ADAMTSL4-AS1Q5T5F5 129 aa12.51□□□□□ -0.41
CCDC88C-203ENST00000389856 EIF4EBP3O60516 100 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-203ENST00000389856 TCL1BO95988 128 aa12.5□□□□□ -0.41
CCDC88C-203ENST00000389856 TENM3Q9P273 2699 aa12.5□□□□□ -0.41
CCDC88C-203ENST00000389856 ETDBQ3ZM63 59 aa12.49□□□□□ -0.41
CCDC88C-203ENST00000389856 Q9H8V8 135 aa12.49□□□□□ -0.41
CCDC88C-203ENST00000389856 ANGP03950 147 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-203ENST00000389856 Q1RN00 199 aa12.48□□□□□ -0.41
CCDC88C-203ENST00000389856 ZNF625Q96I27 306 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-203ENST00000389856 IGKV3OR2-268A0A0C4DH90 116 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms