RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MRPL23Q16540 153 aaKnown RBP17.5■□□□□ 0.39
SHOX2-201ENST00000389589 RETNQ9HD89 108 aa17.5■□□□□ 0.39
SHOX2-201ENST00000389589 COL6A5A8TX70 2615 aa17.5■□□□□ 0.39
SHOX2-201ENST00000389589 HTN3P15516 51 aa17.49■□□□□ 0.39
SHOX2-201ENST00000389589 DNAH3Q8TD57 4116 aa17.48■□□□□ 0.39
SHOX2-201ENST00000389589 SMIM1B2RUZ4 78 aa17.48■□□□□ 0.39
SHOX2-201ENST00000389589 TMEM262E9PQX1 116 aa17.48■□□□□ 0.39
SHOX2-201ENST00000389589 C11orf68Q9H3H3 251 aaKnown RBP17.48■□□□□ 0.39
SHOX2-201ENST00000389589 ICOSQ9Y6W8 199 aa17.47■□□□□ 0.39
SHOX2-201ENST00000389589 NDUFA1O15239 70 aa17.46■□□□□ 0.39
SHOX2-201ENST00000389589 RBX1P62877 108 aa17.46■□□□□ 0.39
SHOX2-201ENST00000389589 A0A1W2PPM0 123 aa17.45■□□□□ 0.38
SHOX2-201ENST00000389589 CCL25O15444 150 aa17.45■□□□□ 0.38
SHOX2-201ENST00000389589 IGKV3OR2-268A0A0C4DH90 116 aa17.43■□□□□ 0.38
SHOX2-201ENST00000389589 NAA38Q9BRA0 125 aaKnown RBP17.43■□□□□ 0.38
SHOX2-201ENST00000389589 TIMM17BO60830 172 aa17.43■□□□□ 0.38
SHOX2-201ENST00000389589 IGLL5B9A064 214 aa17.42■□□□□ 0.38
SHOX2-201ENST00000389589 LITAFQ99732 161 aa17.42■□□□□ 0.38
SHOX2-201ENST00000389589 LINC00959A0A1B0GUT2 108 aa17.41■□□□□ 0.38
SHOX2-201ENST00000389589 FABP2P12104 132 aa17.41■□□□□ 0.38
SHOX2-201ENST00000389589 GTF2H5Q6ZYL4 71 aa17.41■□□□□ 0.38
SHOX2-201ENST00000389589 RPL24P83731 157 aaKnown RBP17.41■□□□□ 0.38
SHOX2-201ENST00000389589 SPANXDQ9BXN6 97 aa17.41■□□□□ 0.38
SHOX2-201ENST00000389589 SPANXCQ9NY87 97 aa17.41■□□□□ 0.38
SHOX2-201ENST00000389589 GAGE10A6NGK3 116 aa17.4■□□□□ 0.38
SHOX2-201ENST00000389589 H3BNG1 76 aa17.4■□□□□ 0.38
SHOX2-201ENST00000389589 IGHV3OR16-9A0A0B4J2B5 98 aa17.39■□□□□ 0.37
SHOX2-201ENST00000389589 LELP1Q5T871 98 aa17.39■□□□□ 0.37
SHOX2-201ENST00000389589 SS18Q15532 418 aa17.38■□□□□ 0.37
SHOX2-201ENST00000389589 MUSTN1Q8IVN3 82 aa17.38■□□□□ 0.37
SHOX2-201ENST00000389589 Q9H8V8 135 aa17.38■□□□□ 0.37
SHOX2-201ENST00000389589 K7EP34 96 aa17.37■□□□□ 0.37
SHOX2-201ENST00000389589 CIRBPQ14011 172 aaKnown RBP17.37■□□□□ 0.37
SHOX2-201ENST00000389589 MIAQ16674 131 aa17.36■□□□□ 0.37
SHOX2-201ENST00000389589 ANK2Q01484 3957 aa17.36■□□□□ 0.37
SHOX2-201ENST00000389589 A0A087WZ39 114 aa17.36■□□□□ 0.37
SHOX2-201ENST00000389589 APOMO95445 188 aa17.36■□□□□ 0.37
SHOX2-201ENST00000389589 HERV-K104P63124 156 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 SPCS1Q9Y6A9 102 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 A4D1N5 150 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 CFC1BP0CG36 223 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 CFC1P0CG37 223 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 ADAMTSL4-AS1Q5T5F5 129 aa17.35■□□□□ 0.37
SHOX2-201ENST00000389589 ZNF625Q96I27 306 aaPredicted RBP17.35■□□□□ 0.37
SHOX2-201ENST00000389589 TRAV16A0A0A6YYK6 109 aaPredicted RBP17.33■□□□□ 0.37
SHOX2-201ENST00000389589 A0A0J9YWU9 116 aa17.33■□□□□ 0.37
SHOX2-201ENST00000389589 PRSS2P07478 247 aa17.33■□□□□ 0.37
SHOX2-201ENST00000389589 Q6ZTC4 211 aa17.33■□□□□ 0.37
SHOX2-201ENST00000389589 COX7B2Q8TF08 81 aa17.33■□□□□ 0.37
SHOX2-201ENST00000389589 PGPEP1Q9NXJ5 209 aa17.33■□□□□ 0.37
SHOX2-201ENST00000389589 IFITM1P13164 125 aa17.32■□□□□ 0.36
SHOX2-201ENST00000389589 LINC00269Q8N2A0 174 aa17.31■□□□□ 0.36
SHOX2-201ENST00000389589 SPATA25Q9BR10 227 aa17.31■□□□□ 0.36
SHOX2-201ENST00000389589 A0A0B4J2C4 111 aa17.3■□□□□ 0.36
SHOX2-201ENST00000389589 ANGP03950 147 aaKnown RBP17.3■□□□□ 0.36
SHOX2-201ENST00000389589 KPRPQ5T749 579 aaPredicted RBP17.3■□□□□ 0.36
SHOX2-201ENST00000389589 LYPD5Q6UWN5 251 aa17.3■□□□□ 0.36
SHOX2-201ENST00000389589 LINC01561Q8N1V8 128 aa17.3■□□□□ 0.36
SHOX2-201ENST00000389589 PRO1854Q9UHT4 67 aa17.3■□□□□ 0.36
SHOX2-201ENST00000389589 C5orf38Q86SI9 138 aa17.29■□□□□ 0.36
SHOX2-201ENST00000389589 C11orf45Q8TAV5 145 aa17.29■□□□□ 0.36
SHOX2-201ENST00000389589 XCL1P47992 114 aa17.28■□□□□ 0.36
SHOX2-201ENST00000389589 CLPSL2Q6UWE3 100 aa17.28■□□□□ 0.36
SHOX2-201ENST00000389589 K7EIL1 84 aa17.28■□□□□ 0.36
SHOX2-201ENST00000389589 NOTCH1P46531 2555 aa17.28■□□□□ 0.36
SHOX2-201ENST00000389589 TSPAN13O95857 204 aa17.27■□□□□ 0.36
SHOX2-201ENST00000389589 REG3AQ06141 175 aa17.27■□□□□ 0.36
SHOX2-201ENST00000389589 PRB2P02812 416 aaPredicted RBP17.27■□□□□ 0.35
SHOX2-201ENST00000389589 COPS9Q8WXC6 57 aa17.27■□□□□ 0.35
SHOX2-201ENST00000389589 TOMM7Q9P0U1 55 aa17.27■□□□□ 0.35
SHOX2-201ENST00000389589 MEIG1Q5JSS6 88 aa17.26■□□□□ 0.35
SHOX2-201ENST00000389589 TM2D3Q9BRN9 247 aa17.26■□□□□ 0.35
SHOX2-201ENST00000389589 SFTA2Q6UW10 78 aa17.25■□□□□ 0.35
SHOX2-201ENST00000389589 NANOS2P60321 138 aaKnown RBP17.25■□□□□ 0.35
SHOX2-201ENST00000389589 CD164L2Q6UWJ8 174 aa17.25■□□□□ 0.35
SHOX2-201ENST00000389589 Q8N3U1 123 aa17.24■□□□□ 0.35
SHOX2-201ENST00000389589 DEFB131BA0A096LNP1 70 aa17.23■□□□□ 0.35
SHOX2-201ENST00000389589 DEFB121Q5J5C9 76 aa17.23■□□□□ 0.35
SHOX2-201ENST00000389589 CHCHD10Q8WYQ3 142 aaPredicted RBP17.22■□□□□ 0.35
SHOX2-201ENST00000389589 TENM3Q9P273 2699 aa17.22■□□□□ 0.35
SHOX2-201ENST00000389589 EIF4EBP3O60516 100 aaPredicted RBP17.22■□□□□ 0.35
SHOX2-201ENST00000389589 LYRM7Q5U5X0 104 aa17.22■□□□□ 0.35
SHOX2-201ENST00000389589 DAND5Q8N907 189 aa17.22■□□□□ 0.35
SHOX2-201ENST00000389589 NPC2P61916 151 aa17.21■□□□□ 0.35
SHOX2-201ENST00000389589 LINC00308Q8TCZ7 52 aa17.21■□□□□ 0.35
SHOX2-201ENST00000389589 IGHV3-33P01772 117 aa17.2■□□□□ 0.34
SHOX2-201ENST00000389589 MDFIQ99750 246 aa17.2■□□□□ 0.34
SHOX2-201ENST00000389589 PPDPFQ9H3Y8 114 aa17.2■□□□□ 0.34
SHOX2-201ENST00000389589 ERG28Q9UKR5 140 aa17.2■□□□□ 0.34
SHOX2-201ENST00000389589 NBEAL1Q6ZS30 2694 aa17.2■□□□□ 0.34
SHOX2-201ENST00000389589 COX7A2LO14548 114 aa17.19■□□□□ 0.34
SHOX2-201ENST00000389589 Q8IZM0 81 aa17.19■□□□□ 0.34
SHOX2-201ENST00000389589 PRR34Q9NV39 138 aa17.19■□□□□ 0.34
SHOX2-201ENST00000389589 C6orf226Q5I0X4 101 aa17.18■□□□□ 0.34
SHOX2-201ENST00000389589 A0A0U1RRA0 63 aa17.17■□□□□ 0.34
SHOX2-201ENST00000389589 LOC107984156A0A0G2JMH3 177 aa17.17■□□□□ 0.34
SHOX2-201ENST00000389589 ARL17AQ8IVW1 177 aa17.17■□□□□ 0.34
SHOX2-201ENST00000389589 MRAPQ8TCY5 172 aa17.16■□□□□ 0.34
SHOX2-201ENST00000389589 KLK12Q9UKR0 248 aa17.16■□□□□ 0.34
SHOX2-201ENST00000389589 IGLV10-54A0A075B6I4 117 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms