RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SNCGO76070 127 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 TRGC2P03986 189 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 HMGB1P09429 215 aaKnown RBP-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 TSPAN19P0C672 248 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 NUTF2P61970 127 aaKnown RBP-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 GRB2P62993 217 aaKnown RBP-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 SKP1P63208 163 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 MRPS25P82663 173 aaKnown RBP-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 SNX1Q13596 522 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 TOMM20Q15388 145 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 RHOHQ15669 191 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 EXOC3L4Q17RC7 722 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 VMA21Q3ZAQ7 101 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 CCDC153Q494R4 210 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 C1orf185Q5T7R7 199 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 C12orf60Q5U649 245 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 SPATA1Q5VX52 437 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 STAG3L4Q8TBR4 150 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 CAPSLQ8WWF8 208 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 CHCHD1Q96BP2 118 aaKnown RBP-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 ZHX1-C8orf76Q96EF9 292 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 COX14Q96I36 57 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 UQCC2Q9BRT2 126 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 NMES1Q9C002 83 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 KIF27Q86VH2 1401 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 ABCC8Q09428 1581 aa-2.37□□□□□ -2.79
RNU6-540P-201ENST00000384622 TCHHQ07283 1943 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 TRBV19A0A075B6N1 114 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 A0A087WWC5 75 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 LINC00862A6NCI5 91 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CCDC69A6NI79 296 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 FAM74A7A6NL05 159 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CHP2O43745 196 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CALB1P05937 261 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 GSTT2P0CG29 244 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 HSMCR30P0CW71 290 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 SAA2P0DJI9 122 aaPredicted RBP-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CCL2P13500 99 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 COX5AP20674 150 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 SUB1P53999 127 aaKnown RBP eCLIP-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 FAM74A3Q4VXF1 159 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 NCMAPQ5T1S8 102 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 UTS2BQ765I0 119 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CCDC91Q7Z6B0 441 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 SPATA24Q86W54 205 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 CCDC65Q8IXS2 484 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 ANKRD7Q92527 254 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 PTH2Q96A98 100 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 IFI27L1Q96BM0 104 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 MRAP2Q96G30 205 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 MRPL48Q96GC5 212 aaKnown RBP-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 ANP32EQ9BTT0 268 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 POLE3Q9NRF9 147 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 SDHAF2Q9NX18 166 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 BLOC1S6Q9UL45 172 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 ODF2LQ9ULJ1 636 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 ARFGEF2Q9Y6D5 1785 aa-2.38□□□□□ -2.79
RNU6-540P-201ENST00000384622 MYOM2P54296 1465 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 hCG_1807616A0A1W2PRN6 198 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 AIM2O14862 343 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 STX10O60499 249 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 DEXIO95424 95 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 RBP4P02753 201 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 SLC25A5P05141 298 aaKnown RBP-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 CSN2P05814 226 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 IGLC6P0CF74 106 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 GSTT2BP0CG30 244 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 MYL2P10916 166 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 CXCL2P19875 107 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 CARD18P57730 90 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 SARNPP82979 210 aaKnown RBP-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 CLVS2Q5SYC1 327 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 LAMTOR1Q6IAA8 161 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 GOLT1AQ6ZVE7 132 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 DEFB108BQ8NET1 73 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 IFT81Q8WYA0 676 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 KIAA1143Q96AT1 154 aaPredicted RBP-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 FAM213AQ9BRX8 229 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 ANAPC13Q9BS18 74 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 TMEM191AQ9H0A3 160 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 NAPBQ9H115 298 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 ZC4H2Q9NQZ6 224 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 CHMP2BQ9UQN3 213 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 Q9Y3F1 56 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 TOP2AP11388 1531 aaKnown RBP-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 DCAF1Q9Y4B6 1507 aa-2.39□□□□□ -2.79
RNU6-540P-201ENST00000384622 ABCA10Q8WWZ4 1543 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 H3BQF6 201 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 H3BUT2 72 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 I3L521 148 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 ARPC3O15145 178 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 CST8O60676 142 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 UTS2O95399 124 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 SFT2D2O95562 160 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 HBDP02042 147 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 RPA3P35244 121 aaPredicted RBP-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 ANP32AP39687 249 aaKnown RBP-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 CBX5P45973 191 aa-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 RPS5P46782 204 aaKnown RBP-2.4□□□□□ -2.79
RNU6-540P-201ENST00000384622 DNASE1L1P49184 302 aa-2.4□□□□□ -2.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms