RNA–Protein interactions for RNA: ENST00000378133.4

PCDHA1-201, Transcript of protocadherin alpha 1, humanhuman

BASIC

Gene PCDHA1, Length 2,726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-201ENST00000378133 DEFB114Q30KQ6 69 aa11.92□□□□□ -0.5
PCDHA1-201ENST00000378133 SONP18583 2426 aaKnown RBP11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 C4orf3Q8WVX3 66 aa11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 XCL2Q9UBD3 114 aa11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 ZNF469Q96JG9 3925 aaPredicted RBP11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 A0A1B0GX51 115 aa11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 OR13C6PQ8NH95 151 aa11.91□□□□□ -0.5
PCDHA1-201ENST00000378133 SOSTDC1Q6X4U4 206 aa11.9□□□□□ -0.5
PCDHA1-201ENST00000378133 COPS9Q8WXC6 57 aa11.9□□□□□ -0.5
PCDHA1-201ENST00000378133 IGHV3OR16-12A0A075B7B8 117 aa11.9□□□□□ -0.5
PCDHA1-201ENST00000378133 INSP01308 110 aa11.9□□□□□ -0.5
PCDHA1-201ENST00000378133 BEAN1Q3B7T3 259 aa11.9□□□□□ -0.5
PCDHA1-201ENST00000378133 APCP25054 2843 aa11.9□□□□□ -0.51
PCDHA1-201ENST00000378133 UQCRQO14949 82 aa11.89□□□□□ -0.51
PCDHA1-201ENST00000378133 TRACP01848 142 aa11.89□□□□□ -0.51
PCDHA1-201ENST00000378133 DEFB113Q30KQ7 82 aa11.89□□□□□ -0.51
PCDHA1-201ENST00000378133 IGLV5-39A0A0G2JS06 123 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 RS1O15537 224 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 HELZ2Q9BYK8 2649 aaKnown RBP11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 LINC00526Q96FQ7 95 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 NF1P21359 2839 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 C2CD3Q4AC94 2353 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 LINC00242Q5T6M2 205 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 SDIM1Q6ZPB5 146 aa11.88□□□□□ -0.51
PCDHA1-201ENST00000378133 C4orf26Q17RF5 130 aa11.87□□□□□ -0.51
PCDHA1-201ENST00000378133 PRIMA1Q86XR5 153 aa11.87□□□□□ -0.51
PCDHA1-201ENST00000378133 C11orf44Q8N8P7 122 aa11.87□□□□□ -0.51
PCDHA1-201ENST00000378133 AKAP9Q99996 3911 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 ATP5G1P05496 136 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 GAGE2AQ6NT46 116 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 FAM218AQ96MZ4 157 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 C22orf24Q9Y442 160 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 ODF3L2Q3SX64 289 aa11.86□□□□□ -0.51
PCDHA1-201ENST00000378133 CXCL5P42830 114 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 C5orf38Q86SI9 138 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 SETD2Q9BYW2 2564 aaPredicted RBP11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 TRGV1A0A0A0MS02 117 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 SMIM1B2RUZ4 78 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 RPS28P62857 69 aaKnown RBP11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 KRTAP1-3Q8IUG1 177 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 Q96MF0 132 aa11.85□□□□□ -0.51
PCDHA1-201ENST00000378133 INAFM2P0DMQ5 153 aa11.84□□□□□ -0.51
PCDHA1-201ENST00000378133 STHQ8IWL8 128 aa11.84□□□□□ -0.51
PCDHA1-201ENST00000378133 C1orf158Q8N1D5 194 aa11.84□□□□□ -0.51
PCDHA1-201ENST00000378133 TRAV13-1A0A0B4J241 112 aa11.84□□□□□ -0.51
PCDHA1-201ENST00000378133 A0A1W2PRX2 142 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 HRCT1Q6UXD1 115 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 CYSTM1Q9H1C7 97 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 Q9HAA7 133 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 FAM222AQ5U5X8 452 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 KIR2DL5BQ8NHK3 375 aa11.83□□□□□ -0.52
PCDHA1-201ENST00000378133 GCN1Q92616 2671 aaKnown RBP11.82□□□□□ -0.52
PCDHA1-201ENST00000378133 COX7CP15954 63 aa11.81□□□□□ -0.52
PCDHA1-201ENST00000378133 MALP21145 153 aa11.81□□□□□ -0.52
PCDHA1-201ENST00000378133 OXTP01178 125 aa11.81□□□□□ -0.52
PCDHA1-201ENST00000378133 JMJD1CQ15652 2540 aa11.81□□□□□ -0.52
PCDHA1-201ENST00000378133 Q6ZTI0 123 aa11.8□□□□□ -0.52
PCDHA1-201ENST00000378133 CCDC168Q8NDH2 2452 aa11.8□□□□□ -0.52
PCDHA1-201ENST00000378133 NIPBLQ6KC79 2804 aaeCLIP11.8□□□□□ -0.52
PCDHA1-201ENST00000378133 NTM-AS1Q6ZSK4 140 aa11.8□□□□□ -0.52
PCDHA1-201ENST00000378133 hADV29S1A0JD25 119 aa11.79□□□□□ -0.52
PCDHA1-201ENST00000378133 RPL36AP83881 106 aaKnown RBP11.79□□□□□ -0.52
PCDHA1-201ENST00000378133 FAM19A3Q7Z5A8 133 aa11.79□□□□□ -0.52
PCDHA1-201ENST00000378133 RPL36ALQ969Q0 106 aaKnown RBP11.79□□□□□ -0.52
PCDHA1-201ENST00000378133 PDZD2O15018 2839 aa11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 TRAV13-2A0A0B4J235 113 aa11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 RPL28P46779 137 aaKnown RBP11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 IL17DQ8TAD2 202 aa11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 C2orf48Q96LS8 159 aa11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 ITPR3Q14573 2671 aa11.78□□□□□ -0.52
PCDHA1-201ENST00000378133 DPH3Q96FX2 82 aa11.77□□□□□ -0.52
PCDHA1-201ENST00000378133 K7EQD1 137 aa11.77□□□□□ -0.53
PCDHA1-201ENST00000378133 PF4P02776 101 aa11.77□□□□□ -0.53
PCDHA1-201ENST00000378133 CCL24O00175 119 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 ATOX1O00244 68 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 CRPP02741 224 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 WFDC11Q8NEX6 87 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 DNAL4O96015 105 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 CRYGAP11844 174 aa11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 NOP10Q9NPE3 64 aaKnown RBP11.76□□□□□ -0.53
PCDHA1-201ENST00000378133 HIST1H4AP62805 103 aaKnown RBP11.75□□□□□ -0.53
PCDHA1-201ENST00000378133 Q5XG85 94 aa11.75□□□□□ -0.53
PCDHA1-201ENST00000378133 DSCR8Q96T75 97 aa11.75□□□□□ -0.53
PCDHA1-201ENST00000378133 TRBV10-1A0A0K0K1A3 114 aa11.74□□□□□ -0.53
PCDHA1-201ENST00000378133 DNAJC9-AS1A6NH13 148 aa11.74□□□□□ -0.53
PCDHA1-201ENST00000378133 LINC00337Q8N6G1 96 aa11.74□□□□□ -0.53
PCDHA1-201ENST00000378133 CDC42SE2Q9NRR3 84 aa11.74□□□□□ -0.53
PCDHA1-201ENST00000378133 SETXQ7Z333 2677 aaKnown RBP11.74□□□□□ -0.53
PCDHA1-201ENST00000378133 C14orf132Q9NPU4 83 aa11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 MIR7-3HGQ8N6C7 128 aa11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 A0A087WYN8 130 aa11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 C9orf129Q5T035 196 aaKnown RBP11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 OVOL2Q9BRP0 275 aa11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 SND1-IT1Q9HBX3 110 aa11.73□□□□□ -0.53
PCDHA1-201ENST00000378133 TMEM86BQ8N661 226 aa11.72□□□□□ -0.53
PCDHA1-201ENST00000378133 ESM1Q9NQ30 184 aa11.72□□□□□ -0.53
PCDHA1-201ENST00000378133 IGKV2-28A0A075B6P5 120 aa11.72□□□□□ -0.53
PCDHA1-201ENST00000378133 IGKV3D-7A0A0C4DH55 119 aa11.72□□□□□ -0.53
PCDHA1-201ENST00000378133 IGKV2D-28P01615 120 aa11.72□□□□□ -0.53
PCDHA1-201ENST00000378133 MRAPQ8TCY5 172 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms